Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5663 Trifolium pratense HOM05D000078 ORTHO05D000025 1.9e-49 198.7 95 100.0
Ca_11630_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 8.8e-26 120.2 85 70.6
Ca_30238_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 8.8e-26 120.2 85 70.6
Medtr1g060910 Medicago truncatula HOM05D000078 ORTHO05D000025 1.4e-23 112.8 85 67.1
Psat6g079440 Pisum sativum HOM05D000078 ORTHO05D000025 7.7e-22 107.1 83 65.1
Glyma.13G152000 Glycine max HOM05D000078 ORTHO05D000025 8.5e-21 103.6 90 56.7
Lalb_Chr02g0155211 Lupinus albus HOM05D000078 ORTHO05D000025 2.7e-19 98.6 66 69.7
Lj5g0019619 Lotus japonicus HOM05D000078 ORTHO05D000025 3.0e-18 95.1 53 75.5
Lalb_Chr06g0173301 Lupinus albus HOM05D000078 ORTHO05D000025 5.2e-18 94.4 62 72.6
Phvul.007G222500 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 8.8e-18 93.6 50 78.0
Glyma.10G067000 Glycine max HOM05D000078 ORTHO05D000025 5.7e-17 90.9 58 69.0
VMungo0720G0961 Vigna mungo HOM05D000078 ORTHO05D000025 7.0e-15 84.0 46 78.3
TAR633G0392 Trochodendron aralioides HOM05D000078 ORTHO05D000025 1.6e-14 82.8 50 70.0
Haze_19557 Corylus avellana HOM05D000078 ORTHO05D000025 2.7e-14 82.0 53 64.2
Cfa016555 Carpinus fangiana HOM05D000078 ORTHO05D000025 1.3e-13 79.7 90 43.3
Cfa016553 Carpinus fangiana HOM05D000078 ORTHO05D000025 2.3e-13 79.0 53 62.3
CsaV3_3G036940 Cucumis sativus L. HOM05D000078 ORTHO05D000025 2.3e-13 79.0 58 55.2
MELO3C009442.2 Cucumis melo HOM05D000078 ORTHO05D000025 2.9e-13 78.6 78 47.4
MD14G1017200 Malus domestica HOM05D000078 ORTHO05D000025 3.8e-13 78.2 89 47.2
Aqoxy4G02870 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 6.5e-13 77.4 49 67.3
Lju50C21T1 Lonicera japonica HOM05D000078 ORTHO05D000025 6.5e-13 77.4 55 63.6
CSS0011295 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 8.6e-13 77.0 87 46.0
Potri.004G187001 Populus trichocarpa HOM05D000078 ORTHO05D000025 1.1e-12 76.6 49 63.3
Prupe.7G115900 Prunus persica HOM05D000078 ORTHO05D000025 1.1e-12 76.6 78 52.6
Cfa010074 Carpinus fangiana HOM05D000078 ORTHO05D000025 1.5e-12 76.3 60 55.0
Lju50C22T0 Lonicera japonica HOM05D000078 ORTHO05D000025 1.9e-12 75.9 71 56.3
Manes.08G022000 Manihot esculenta HOM05D000078 ORTHO05D000025 2.5e-12 75.5 71 50.7
Duzib128G0578 Durio zibethinus HOM05D000078 ORTHO05D000025 3.2e-12 75.1 63 55.6
CSS0016114 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 4.2e-12 74.7 71 52.1
Glyma.11G188200 Glycine max HOM05D000078 ORTHO05D000025 4.2e-12 74.7 53 60.4
Manes.09G058808 Manihot esculenta HOM05D000078 ORTHO05D000025 4.2e-12 74.7 77 46.8
Nn2g14046 Nelumbo nucifera HOM05D000078 ORTHO05D000025 4.2e-12 74.7 66 54.5
Nn2g16029 Nelumbo nucifera HOM05D000078 ORTHO05D000025 4.2e-12 74.7 66 54.5
Lju50C21T0 Lonicera japonica HOM05D000078 ORTHO05D000025 5.5e-12 74.3 55 60.0
QL01p013445 Quercus lobata HOM05D000078 ORTHO05D000025 5.5e-12 74.3 48 64.6
QL01p013490 Quercus lobata HOM05D000078 ORTHO05D000025 5.5e-12 74.3 48 64.6
QL01p013538 Quercus lobata HOM05D000078 ORTHO05D000025 7.2e-12 73.9 48 64.6
CiPaw.09G009500 Carya illinoinensis HOM05D000078 ORTHO05D000025 9.5e-12 73.6 46 65.2
COL.COLO4_29801 Corchorus olitorius HOM05D000078 ORTHO05D000025 9.5e-12 73.6 65 55.4
Peaxi162Scf00757g00019 Petunia axillaris HOM05D000078 ORTHO05D000025 9.5e-12 73.6 49 63.3
CAN.G386.28 Capsicum annuum HOM05D000078 ORTHO05D000025 2.1e-11 72.4 65 52.3
PSO339G3877 Papaver somniferum HOM05D000078 ORTHO05D000025 2.1e-11 72.4 61 52.5
QL07p040115 Quercus lobata HOM05D000078 ORTHO05D000025 2.8e-11 72.0 53 60.4
GSVIVG01031388001 Vitis vinifera HOM05D000078 ORTHO05D000025 2.8e-11 72.0 48 64.6
Glyma.12G086200 Glycine max HOM05D000078 ORTHO05D000025 4.7e-11 71.2 53 62.3
VMungo1080G1178 Vigna mungo HOM05D000078 ORTHO05D000025 4.7e-11 71.2 57 57.9
Medtr2g085005 Medicago truncatula HOM05D000078 ORTHO05D000025 6.1e-11 70.9 50 58.0
TWI79G1285 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 6.1e-11 70.9 74 45.9
Medtr2g085015 Medicago truncatula HOM05D000078 ORTHO05D000025 8.0e-11 70.5 50 58.0
VMungo1127G1505 Vigna mungo HOM05D000078 ORTHO05D000025 8.0e-11 70.5 96 42.7
Phvul.005G126300 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 1.0e-10 70.1 54 55.6
Potri.009G147700 Populus trichocarpa HOM05D000078 ORTHO05D000025 1.0e-10 70.1 63 50.8
Rhsim01G0207300 Rhododendron simsii HOM05D000078 ORTHO05D000025 1.0e-10 70.1 54 59.3
Thecc.05G082900 Theobroma cacao HOM05D000078 ORTHO05D000025 1.0e-10 70.1 62 53.2
Ciclev10013766m.g Citrus clementina HOM05D000078 ORTHO05D000025 1.4e-10 69.7 49 57.1
Lj2P992T12 Lonicera japonica HOM05D000078 ORTHO05D000025 1.4e-10 69.7 51 56.9
Nn6g35023 Nelumbo nucifera HOM05D000078 ORTHO05D000025 1.4e-10 69.7 73 46.6
Cc01_g09680 Coffea canephora HOM05D000078 ORTHO05D000025 2.3e-10 68.9 71 47.9
Phvul.011G091400 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 2.3e-10 68.9 59 50.8
Sabra09G0113900 Salix brachista HOM05D000078 ORTHO05D000025 2.3e-10 68.9 76 44.7
Sabra09G0116400 Salix brachista HOM05D000078 ORTHO05D000025 2.3e-10 68.9 76 44.7
TAR633G1406 Trochodendron aralioides HOM05D000078 ORTHO05D000025 2.3e-10 68.9 49 59.2
Ah.08g216060 Amaranthus hybridus HOM05D000078 ORTHO05D000025 3.0e-10 68.6 79 46.8
FAN02G3248 Fragaria x ananassa HOM05D000078 ORTHO05D000025 3.0e-10 68.6 60 51.7
PSO384G1534 Papaver somniferum HOM05D000078 ORTHO05D000025 3.0e-10 68.6 63 50.8
PSO384G2927 Papaver somniferum HOM05D000078 ORTHO05D000025 3.0e-10 68.6 63 50.8
Solyc01g009440.3 Solanum lycopersicum HOM05D000078 ORTHO05D000025 3.0e-10 68.6 65 49.2
Sopen01g004960 Solanum pennellii HOM05D000078 ORTHO05D000025 3.0e-10 68.6 65 49.2
PGSC0003DMG400038366 Solanum tuberosum HOM05D000078 ORTHO05D000025 3.0e-10 68.6 65 49.2
ATR0820G287 Amborella trichopoda HOM05D000078 ORTHO05D000025 4.0e-10 68.2 53 54.7
FAN05G0033 Fragaria x ananassa HOM05D000078 ORTHO05D000025 4.0e-10 68.2 60 51.7
FAN05G0126 Fragaria x ananassa HOM05D000078 ORTHO05D000025 4.0e-10 68.2 60 51.7
FAN09G1671 Fragaria x ananassa HOM05D000078 ORTHO05D000025 4.0e-10 68.2 60 51.7
HanXRQChr02g0054841 Helianthus annuus HOM05D000078 ORTHO05D000025 4.0e-10 68.2 54 57.4
FvH4_6g18090 Fragaria vesca HOM05D000078 ORTHO05D000025 5.2e-10 67.8 59 50.8
Gohir.D01G197600 Gossypium hirsutum HOM05D000078 ORTHO05D000025 8.8e-10 67.0 71 47.9
RcHm_v2.0_Chr3g0472361 Rosa chinensis HOM05D000078 ORTHO05D000025 8.8e-10 67.0 70 47.1
ClCG10G019250 Citrullus lanatus HOM05D000078 ORTHO05D000025 1.2e-09 66.6 78 42.3
Glyma.12G182400 Glycine max HOM05D000078 ORTHO05D000025 1.2e-09 66.6 53 54.7
Lsat_1_v5_gn_6_41680 Lactuca sativa HOM05D000078 ORTHO05D000025 1.2e-09 66.6 56 55.4
Duzib106G1556 Durio zibethinus HOM05D000078 ORTHO05D000025 2.0e-09 65.9 54 55.6
Gohir.A04G065414 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.0e-09 65.9 52 57.7
PGR142G3894 Punica granatum HOM05D000078 ORTHO05D000025 2.0e-09 65.9 50 56.0
ECA233G1493 Erigeron canadensis HOM05D000078 ORTHO05D000025 2.6e-09 65.5 64 46.9
Gohir.A01G208500 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.6e-09 65.5 78 42.3
Gohir.D04G103200 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.6e-09 65.5 52 57.7
Gorai.009G406800 Gossypium raimondii HOM05D000078 ORTHO05D000025 2.6e-09 65.5 52 57.7
Aqoxy2G01364 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 4.4e-09 64.7 47 53.2
Thecc.09G290200 Theobroma cacao HOM05D000078 ORTHO05D000025 4.4e-09 64.7 64 51.6
TPR.G23427 Trifolium pratense HOM05D000078 ORTHO05D000025 4.4e-09 64.7 68 45.6
Gorai.002G241700 Gossypium raimondii HOM05D000078 ORTHO05D000025 5.7e-09 64.3 71 46.5
Nitab4.5_0025012g0010 Nicotiana tabacum HOM05D000078 ORTHO05D000025 5.7e-09 64.3 66 53.0
arahy.Tifrunner.gnm1.ann1.GS7VU5 Arachis hypogaea HOM05D000078 ORTHO05D000025 7.5e-09 63.9 52 55.8
Eucgr.K02069 Eucalyptus grandis HOM05D000078 ORTHO05D000025 7.5e-09 63.9 85 44.7
Aqoxy2G01363 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 1.3e-08 63.2 50 58.0
COL.COLO4_19961 Corchorus olitorius HOM05D000078 ORTHO05D000025 1.3e-08 63.2 101 35.6
TWI53G0174 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 1.3e-08 63.2 80 41.2
CiPaw.13G140100 Carya illinoinensis HOM05D000078 ORTHO05D000025 1.7e-08 62.8 49 63.3
AUR62038118 Chenopodium quinoa HOM05D000078 ORTHO05D000025 1.7e-08 62.8 64 46.9
AUR62043079 Chenopodium quinoa HOM05D000078 ORTHO05D000025 1.7e-08 62.8 64 46.9
Dinv29435 Davidia involucrata HOM05D000078 ORTHO05D000025 1.7e-08 62.8 62 50.0
Duzib093G1151 Durio zibethinus HOM05D000078 ORTHO05D000025 1.7e-08 62.8 52 51.9
Glyma.13G318500 Glycine max HOM05D000078 ORTHO05D000025 1.7e-08 62.8 52 50.0
Hma1.2p1_0695F.1_g204440 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 1.7e-08 62.8 62 48.4
Ah.08g216070 Amaranthus hybridus HOM05D000078 ORTHO05D000025 2.8e-08 62.0 76 44.7
Oeu035539.1 Olea europaea HOM05D000078 ORTHO05D000025 3.7e-08 61.6 50 52.0
Prupe.5G090500 Prunus persica HOM05D000078 ORTHO05D000025 3.7e-08 61.6 56 53.6
GSVIVG01033795001 Vitis vinifera HOM05D000078 ORTHO05D000025 3.7e-08 61.6 49 55.1
Lj2C196T4 Lonicera japonica HOM05D000078 ORTHO05D000025 4.9e-08 61.2 46 54.3
MBI01_g05847_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 4.9e-08 61.2 47 51.1
AUR62009806 Chenopodium quinoa HOM05D000078 ORTHO05D000025 6.3e-08 60.8 64 43.8
SGA_v2.0_scaffold83G26422 Striga asiatica HOM05D000078 ORTHO05D000025 1.4e-07 59.7 52 50.0
Duzib168G2255 Durio zibethinus HOM05D000078 ORTHO05D000025 1.8e-07 59.3 52 53.8
Prupe.5G090100 Prunus persica HOM05D000078 ORTHO05D000025 2.4e-07 58.9 81 42.0
Cpa.g.sc5.66 Carica papaya HOM05D000078 ORTHO05D000025 3.1e-07 58.5 47 51.1
Prupe.5G089900 Prunus persica HOM05D000078 ORTHO05D000025 3.1e-07 58.5 48 54.2
Prupe.5G090000 Prunus persica HOM05D000078 ORTHO05D000025 3.1e-07 58.5 48 52.1
ATR1096G086 Amborella trichopoda HOM05D000078 ORTHO05D000025 4.1e-07 58.2 52 51.9
AUR62009807 Chenopodium quinoa HOM05D000078 ORTHO05D000025 5.4e-07 57.8 42 59.5
Carub.0007s1552 Capsella rubella HOM05D000078 ORTHO05D000025 7.0e-07 57.4 59 50.8
Thhalv10027405m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 7.0e-07 57.4 54 50.0
MBI04_g45832_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 7.0e-07 57.4 78 47.4
MD06G1072300 Malus domestica HOM05D000078 ORTHO05D000025 7.0e-07 57.4 47 53.2
COL.COLO4_05271 Corchorus olitorius HOM05D000078 ORTHO05D000025 9.2e-07 57.0 46 56.5
Manes.11G158533 Manihot esculenta HOM05D000078 ORTHO05D000025 9.2e-07 57.0 87 32.2
Manes.11G158600 Manihot esculenta HOM05D000078 ORTHO05D000025 9.2e-07 57.0 87 32.2
GSVIVG01031387001 Vitis vinifera HOM05D000078 ORTHO05D000025 1.2e-06 56.6 51 56.9
EL10Ac7g15780 Beta vulgaris HOM05D000078 ORTHO05D000025 1.6e-06 56.2 81 39.5
PSO384G1839 Papaver somniferum HOM05D000078 ORTHO05D000025 1.6e-06 56.2 75 40.0
Sc12g0004250 Simmondsia chinensis HOM05D000078 ORTHO05D000025 1.6e-06 56.2 87 40.2
Aqoxy7G00460 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 2.0e-06 55.8 51 52.9
PSO782G5025 Papaver somniferum HOM05D000078 ORTHO05D000025 2.0e-06 55.8 68 44.1
Zm00001eb139970 Zea mays HOM05D000078 ORTHO05D000025 2.0e-06 55.8 51 47.1
Dinv28493 Davidia involucrata HOM05D000078 ORTHO05D000025 2.7e-06 55.5 81 42.0
Nn1g01343 Nelumbo nucifera HOM05D000078 ORTHO05D000025 2.7e-06 55.5 76 38.2
Lj2C196T5 Lonicera japonica HOM05D000078 ORTHO05D000025 3.5e-06 55.1 59 44.1
MD04G1067800 Malus domestica HOM05D000078 ORTHO05D000025 3.5e-06 55.1 51 52.9
BcaB01g04139 Brassica carinata HOM05D000078 ORTHO05D000025 4.5e-06 54.7 62 46.8
Nitab4.5_0002914g0060 Nicotiana tabacum HOM05D000078 ORTHO05D000025 4.5e-06 54.7 58 53.4
Aqoxy7G00459 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 5.9e-06 54.3 51 52.9
AT4G25490 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 5.9e-06 54.3 48 47.9
BcaC06g32809 Brassica carinata HOM05D000078 ORTHO05D000025 5.9e-06 54.3 58 48.3
HanXRQChr02g0037821 Helianthus annuus HOM05D000078 ORTHO05D000025 5.9e-06 54.3 45 55.6
Nn6g34267 Nelumbo nucifera HOM05D000078 ORTHO05D000025 5.9e-06 54.3 58 43.1
PSO384G2686 Papaver somniferum HOM05D000078 ORTHO05D000025 5.9e-06 54.3 72 41.7
Potri.001G110700 Populus trichocarpa HOM05D000078 ORTHO05D000025 5.9e-06 54.3 47 55.3
Prupe.5G090200 Prunus persica HOM05D000078 ORTHO05D000025 5.9e-06 54.3 63 42.9
A03p16710 Brassica napus HOM05D000078 ORTHO05D000025 7.8e-06 53.9 60 48.3
BraA03t10957Z Brassica rapa HOM05D000078 ORTHO05D000025 7.8e-06 53.9 60 48.3
Cpa.g.sc74.84 Carica papaya HOM05D000078 ORTHO05D000025 7.8e-06 53.9 64 48.4
FvH4_5g01440 Fragaria vesca HOM05D000078 ORTHO05D000025 7.8e-06 53.9 88 36.4
FAN18G4533 Fragaria x ananassa HOM05D000078 ORTHO05D000025 7.8e-06 53.9 88 36.4
Oeu048397.1 Olea europaea HOM05D000078 ORTHO05D000025 7.8e-06 53.9 40 60.0
Sp7g23510 Schrenkiella parvula HOM05D000078 ORTHO05D000025 7.8e-06 53.9 58 44.8
Thecc.03G271000 Theobroma cacao HOM05D000078 ORTHO05D000025 7.8e-06 53.9 66 43.9


User provided reference genes

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