Gene: AT4G25490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G25490
  • Transcript Identifier AT4G25490.1
  • Gene Type Coding gene
  • Location Chr4 : 13021921-13022562 : negative

Gene Family Information

  • ID HOM05D000078
  • #Genes/#Species 3763/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G25490.1
  • symbol CBF1
  • Alias ATCBF1,DREB1B,DRE BINDING PROTEIN 1B
  • uniprot B2BIS9

Descriptions

  • Description C-repeat/DRE binding factor 1
  • Computational description C-repeat/DRE binding factor 1 (CBF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009631
IMP, IEP
Gene Ontologycold acclimation1 2
GO:0010628
ISO
PLAZA Integrative Orthologypositive regulation of gene expression AT4G25480
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009409
IMP, IEP
TAS
Gene Ontologyresponse to cold3 4 5
GO:0045893
IDA, IGI
Gene Ontologypositive regulation of transcription, DNA-templated3
GO:0009414
IEP
Gene Ontologyresponse to water deprivation3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000987
ISO
PLAZA Integrative Orthologycis-regulatory region sequence-specific DNA binding AT4G25480
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT4G25480
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA
Gene OntologyDNA binding3
GO:0003677
IEA
InterProDNA binding
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity6
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0005515
IPI
Gene Ontologyprotein binding7

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001471 AP2/ERF domain
IPR036955 AP2/ERF domain superfamily
IPR016177 DNA-binding domain superfamily
Mapman id Description
15.5.7.2 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)
26.4.3.4.2 External stimuli response.temperature.cold response.ICE-CBF cold acclimation transcriptional cascade.transcription factor (CBF/DREB1)