Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.5e-262 909.1 476 100.0
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 6.0e-232 807.4 447 95.3
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 7.6e-227 790.4 447 92.8
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.4e-225 786.2 446 91.7
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 3.1e-212 741.9 452 86.3
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.7e-210 736.1 453 83.7
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 6.3e-205 717.6 447 82.6
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 2.0e-203 712.6 448 81.2
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.2e-201 705.3 455 81.3
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 7.2e-201 704.1 455 81.1
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.0e-199 698.7 450 81.1
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.0e-182 642.9 454 74.7
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.6e-182 642.5 453 75.1
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 2.6e-182 642.5 451 75.6
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 5.3e-180 634.8 452 74.6
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.2e-179 633.6 454 73.6
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 2.2e-178 629.4 451 74.1
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.2e-178 629.4 451 74.7
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.1e-177 627.1 459 75.2
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.2e-177 625.5 451 74.5
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 7.2e-177 624.4 451 74.5
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.6e-176 623.2 439 76.5
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 6.1e-176 621.3 444 73.6
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 8.0e-176 620.9 449 75.1
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.0e-175 620.5 451 74.1
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 5.2e-175 618.2 449 74.2
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.2e-173 612.8 454 71.4
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 2.8e-173 612.5 451 72.3
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 6.3e-173 611.3 450 72.7
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 5.3e-172 608.2 451 71.2
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 9.1e-172 607.4 452 73.2
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.0e-171 606.3 452 72.8
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.0e-171 606.3 452 72.8
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.0e-170 604.0 451 71.0
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.7e-170 603.2 449 71.7
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.2e-170 602.8 450 71.3
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 3.8e-170 602.1 449 71.5
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 8.5e-170 600.9 450 74.2
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 8.5e-170 600.9 454 70.0
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.5e-169 600.1 450 71.3
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.5e-169 600.1 450 71.3
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.9e-169 599.7 452 71.5
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.5e-169 599.4 431 74.5
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 2.5e-169 599.4 436 71.1
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.5e-169 599.4 451 73.6
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.5e-169 599.4 457 71.6
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 4.2e-169 598.6 458 69.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 4.2e-169 598.6 444 72.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 4.2e-169 598.6 460 70.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 7.2e-169 597.8 451 71.2
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 3.0e-167 592.4 454 70.5
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.5e-166 590.1 455 69.9
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 2.6e-166 589.3 454 70.3
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.6e-166 589.3 444 70.9
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 3.4e-166 589.0 453 70.6
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.4e-166 588.6 455 69.5
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 5.7e-166 588.2 455 69.5
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.5e-166 587.8 450 71.3
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 9.8e-166 587.4 452 70.6
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.3e-165 587.0 457 70.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 4.8e-165 585.1 451 70.5
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 4.8e-165 585.1 452 69.5
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 4.8e-165 585.1 453 71.3
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.1e-164 583.9 446 69.3
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.1e-164 582.4 452 70.4
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 4.1e-164 582.0 453 69.5
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.4e-164 581.6 446 70.4
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 5.4e-164 581.6 425 72.7
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.6e-163 580.1 447 70.5
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 2.0e-163 579.7 454 69.2
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 4.5e-163 578.6 441 71.0
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 2.9e-162 575.9 458 67.0
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 5.0e-162 575.1 360 81.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.1e-161 573.9 446 69.5
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.9e-161 573.2 459 66.4
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 4.2e-161 572.0 451 68.7
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.6e-160 570.1 443 70.0
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 2.1e-160 569.7 460 68.7
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.7e-160 569.3 447 69.6
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 6.1e-160 568.2 360 80.8
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 8.8e-159 564.3 443 68.8
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.2e-158 563.9 451 68.3
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.0e-158 563.1 451 68.3
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.3e-157 560.5 427 70.7
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.3e-157 560.5 427 70.7
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.3e-157 560.5 427 70.7
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 2.8e-157 559.3 436 69.5
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 3.7e-157 558.9 441 66.2
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 6.3e-157 558.1 418 71.1
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.4e-156 556.2 439 68.1
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 5.9e-155 551.6 456 66.7
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 7.7e-155 551.2 446 66.6
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 5.0e-154 548.5 446 66.6
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.6e-154 547.7 454 67.2
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.6e-154 547.7 454 67.2
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.5e-153 547.0 446 66.1
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 2.6e-150 536.2 339 79.1
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 4.6e-147 525.4 451 65.4
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 2.5e-145 519.6 362 72.9
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 4.3e-145 518.8 400 69.8
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.3e-137 491.5 448 60.9
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 7.5e-134 481.5 455 60.9
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.7e-131 473.0 318 76.1
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.5e-126 457.2 309 74.8
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 9.2e-124 448.0 305 75.4
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.9e-122 442.6 288 79.2
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 2.2e-117 426.8 367 61.9
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 3.8e-117 426.0 422 55.7
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 7.8e-115 418.3 369 61.0
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.0e-114 416.4 280 76.1
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 5.1e-114 415.6 374 59.9
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 3.3e-113 412.9 366 60.1
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 7.3e-113 411.8 295 70.5
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 9.6e-113 411.4 377 57.0
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 7.6e-110 401.7 280 71.8
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.3e-104 384.4 284 71.5
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.2e-101 373.6 359 57.9
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.6e-99 367.5 369 55.0
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.9e-97 360.5 297 63.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.2e-94 351.3 337 57.0
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.5e-94 350.9 365 54.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.2e-93 347.1 376 52.4
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.2e-93 347.1 359 52.1
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.5e-86 324.3 364 51.6
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 9.3e-84 315.1 377 47.5
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 7.9e-83 312.0 243 67.1
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.4e-68 264.6 329 48.6
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.5e-52 211.5 148 72.3
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 5.5e-52 209.5 342 41.5
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 3.6e-43 180.3 219 48.9
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.7e-41 172.9 164 56.1
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-40 171.8 115 72.2
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.2e-34 149.8 113 66.4
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-33 148.3 88 80.7
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.4e-31 141.0 114 60.5
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.0e-30 136.3 171 47.4
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 2.2e-24 117.9 73 83.6
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.3e-20 104.0 87 70.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.9e-16 90.9 92 48.9
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.9e-12 78.2 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.2e-11 73.2 56 69.6
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 2.2e-08 64.7 178 33.1


User provided reference genes

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