Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4447 Trifolium pratense HOM05D002899 ORTHO05D018620 3.6e-49 198.0 104 100.0
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 4.9e-30 134.4 86 83.7
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 2.7e-28 128.6 108 69.4
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 3.3e-26 121.7 107 66.4
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 5.7e-26 120.9 108 65.7
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 5.7e-26 120.9 107 66.4
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 9.6e-26 120.2 108 65.7
TPR.G9789 Trifolium pratense HOM05D002899 ORTHO05D003850 4.8e-25 117.9 99 69.7
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 6.2e-25 117.5 102 66.7
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 1.1e-24 116.7 108 63.9
TPR.G2005 Trifolium pratense HOM05D002899 ORTHO05D003850 1.1e-24 116.7 96 66.7
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 5.3e-24 114.4 96 65.6
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 5.8e-23 110.9 108 63.9
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 7.6e-23 110.5 109 58.7
Dinv04697 Davidia involucrata HOM05D002899 ORTHO05D003850 1.3e-22 109.8 121 56.2
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 2.9e-22 108.6 110 59.1
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 2.9e-22 108.6 108 57.4
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 3.8e-22 108.2 105 59.0
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 1.4e-21 106.3 112 56.2
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 3.2e-21 105.1 110 57.3
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 7.2e-21 104.0 110 56.4
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 7.2e-21 104.0 110 56.4
Dinv36250 Davidia involucrata HOM05D002899 ORTHO05D003850 7.2e-21 104.0 110 57.3
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 7.2e-21 104.0 105 60.0
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 9.3e-21 103.6 103 59.2
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 1.6e-20 102.8 96 61.5
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 3.5e-20 101.7 103 58.3
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 4.6e-20 101.3 104 57.7
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 4.6e-20 101.3 103 58.3
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.6e-20 101.3 97 60.8
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.6e-20 101.3 97 60.8
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 2.3e-19 99.0 106 54.7
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 2.3e-19 99.0 94 55.3
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 2.3e-19 99.0 94 62.8
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 3.9e-19 98.2 112 54.5
arahy.Tifrunner.gnm1.ann1.S0X35P Arachis hypogaea HOM05D002899 ORTHO05D003850 1.5e-18 96.3 105 57.1
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 1.5e-18 96.3 104 53.8
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 1.5e-18 96.3 110 54.5
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 1.5e-18 96.3 110 54.5
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 1.9e-18 95.9 101 55.4
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 2.5e-18 95.5 108 51.9
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 2.5e-18 95.5 109 52.3
Lj9C25T5 Lonicera japonica HOM05D002899 ORTHO05D003850 3.3e-18 95.1 112 52.7
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 4.3e-18 94.7 112 51.8
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 5.7e-18 94.4 100 57.0
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 5.7e-18 94.4 100 57.0
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 5.7e-18 94.4 107 53.3
Aqoxy6G01674 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 7.4e-18 94.0 100 54.0
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 7.4e-18 94.0 103 55.3
Aqoxy6G01663 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 9.7e-18 93.6 100 54.0
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 9.7e-18 93.6 95 55.8
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 1.3e-17 93.2 101 54.5
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 1.3e-17 93.2 107 54.2
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 1.6e-17 92.8 107 54.2
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.2e-17 92.4 108 50.9
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 2.2e-17 92.4 111 52.3
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 2.2e-17 92.4 101 52.5
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 2.8e-17 92.0 99 53.5
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 3.7e-17 91.7 109 51.4
TAR633G2735 Trochodendron aralioides HOM05D002899 ORTHO05D003850 3.7e-17 91.7 110 51.8
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 4.8e-17 91.3 108 55.6
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 4.8e-17 91.3 107 50.5
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 4.8e-17 91.3 107 51.4
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 4.8e-17 91.3 107 51.4
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 6.3e-17 90.9 110 50.0
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 8.2e-17 90.5 86 59.3
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 1.1e-16 90.1 99 52.5
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 2.4e-16 89.0 108 50.0
Lj9P219T21 Lonicera japonica HOM05D002899 ORTHO05D003850 2.4e-16 89.0 96 55.2
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 3.1e-16 88.6 102 50.0
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 4.1e-16 88.2 95 53.7
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 4.1e-16 88.2 108 50.0
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 4.1e-16 88.2 108 50.0
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 4.1e-16 88.2 111 49.5
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 4.1e-16 88.2 108 50.9
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 5.3e-16 87.8 98 54.1
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 6.9e-16 87.4 108 49.1
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 6.9e-16 87.4 110 48.2
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 6.9e-16 87.4 107 48.6
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 9.0e-16 87.0 110 51.8
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 9.0e-16 87.0 105 48.6
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 1.2e-15 86.7 92 50.0
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 1.2e-15 86.7 106 45.3
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 1.2e-15 86.7 105 48.6
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 1.5e-15 86.3 108 50.0
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 1.5e-15 86.3 97 50.5
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 2.0e-15 85.9 111 46.8
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 2.0e-15 85.9 104 46.2
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 3.4e-15 85.1 97 53.6
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 4.5e-15 84.7 91 57.1
Cc07_g20660 Coffea canephora HOM05D002899 ORTHO05D003850 4.5e-15 84.7 99 49.5
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 4.5e-15 84.7 105 47.6
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 5.9e-15 84.3 108 48.1
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 7.7e-15 84.0 93 51.6
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 1.3e-14 83.2 107 47.7
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 1.3e-14 83.2 108 48.1
arahy.Tifrunner.gnm1.ann1.01UMM0 Arachis hypogaea HOM05D002899 ORTHO05D003850 1.7e-14 82.8 69 62.3
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 1.7e-14 82.8 104 48.1
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 2.2e-14 82.4 92 50.0
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 2.2e-14 82.4 104 49.0
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 2.9e-14 82.0 95 51.6
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 3.8e-14 81.6 97 46.4
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 5.0e-14 81.3 99 54.5
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 5.0e-14 81.3 91 51.6
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 5.0e-14 81.3 91 51.6
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 5.0e-14 81.3 100 48.0
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 8.5e-14 80.5 104 49.0
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 1.1e-13 80.1 92 48.9
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 1.1e-13 80.1 97 49.5
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 1.1e-13 80.1 97 49.5
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 1.4e-13 79.7 95 48.4
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 2.5e-13 79.0 94 50.0
Prupe.7G002000 Prunus persica HOM05D002899 ORTHO05D003850 2.5e-13 79.0 92 53.3
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 2.5e-13 79.0 95 47.4
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 4.2e-13 78.2 89 50.6
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 4.2e-13 78.2 92 50.0
Aqoxy1G02235 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 7.2e-13 77.4 92 53.3
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 9.4e-13 77.0 86 48.8
Ah.12g064150 Amaranthus hybridus HOM05D002899 ORTHO05D003850 4.6e-12 74.7 86 47.7
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 6.1e-12 74.3 92 47.8
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 6.1e-12 74.3 109 47.7
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 1.4e-11 73.2 92 45.7
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 1.4e-11 73.2 92 45.7
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 1.4e-11 73.2 92 45.7
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 1.4e-11 73.2 92 45.7
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 1.4e-11 73.2 92 45.7
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 1.8e-11 72.8 92 45.7
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 1.8e-11 72.8 92 45.7
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 1.8e-11 72.8 92 45.7
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 5.1e-11 71.2 105 43.8
A06p12980 Brassica napus HOM05D002899 ORTHO05D018620 8.8e-11 70.5 94 45.7
HPP92_017275 Vanilla planifolia HOM05D002899 ORTHO05D003850 8.8e-11 70.5 104 42.3
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 1.1e-10 70.1 92 44.6
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 1.5e-10 69.7 101 43.6
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 4.3e-10 68.2 87 46.0
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 1.3e-09 66.6 87 46.0
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 1.3e-09 66.6 95 44.2
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.7e-09 66.2 92 43.5
FAN24G1302 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.7e-09 66.2 132 36.4
AUR62031080 Chenopodium quinoa HOM05D002899 ORTHO05D003850 2.2e-09 65.9 79 46.8
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 1.8e-08 62.8 105 41.9
Zm00001eb135930 Zea mays HOM05D002899 ORTHO05D003850 2.4e-08 62.4 89 42.7
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 3.1e-08 62.0 87 43.7
Os12g0615800 Oryza sativa ssp. japonica HOM05D002899 ORTHO05D003850 6.9e-08 60.8 94 39.4
RcHm_v2.0_Chr6g0293801 Rosa chinensis HOM05D002899 ORTHO05D003850 6.9e-08 60.8 132 34.8
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.2e-07 60.1 79 44.3
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 2.6e-07 58.9 62 46.8
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.7e-06 56.2 61 47.5
SMO165G0034 Selaginella moellendorffii HOM05D002899 ORTHO05D003850 2.9e-06 55.5 88 43.2
COL.COLO4_24093 Corchorus olitorius HOM05D002899 ORTHO05D003850 5.0e-06 54.7 81 44.4
BcaC01g05295 Brassica carinata HOM05D002899 ORTHO05D018620 8.5e-06 53.9 43 55.8


User provided reference genes

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