Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 5.3e-157 557.8 306 100.0
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 6.0e-84 315.1 178 89.9
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 6.2e-73 278.5 176 81.2
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 3.8e-70 269.2 179 75.4
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 4.6e-68 262.3 173 76.3
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 5.1e-67 258.8 183 73.8
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 4.3e-66 255.8 178 72.5
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 6.2e-65 251.9 178 71.3
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.5e-63 247.3 158 75.9
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 3.7e-57 226.1 133 84.2
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 2.1e-52 210.3 172 63.4
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.0e-51 208.0 179 64.2
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 3.9e-51 206.1 173 61.8
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 5.1e-51 205.7 161 65.2
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.7e-51 205.3 174 63.8
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.5e-50 204.1 179 60.3
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 2.0e-50 203.8 156 67.9
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 2.5e-50 203.4 171 63.7
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 3.3e-50 203.0 172 63.4
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 5.7e-50 202.2 174 61.5
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 7.4e-50 201.8 160 65.6
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 7.4e-50 201.8 174 62.1
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 7.4e-50 201.8 171 60.8
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 1.7e-49 200.7 170 61.8
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 2.2e-49 200.3 161 64.6
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.2e-49 200.3 157 67.5
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.8e-49 199.9 172 61.0
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 3.7e-49 199.5 180 59.4
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 4.8e-49 199.1 164 62.8
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.1e-48 198.0 177 62.1
TPR.G39632 Trifolium pratense HOM05D008402 ORTHO05D000988 1.4e-48 197.6 92 98.9
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.1e-48 196.4 160 64.4
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 3.1e-48 196.4 179 57.0
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 6.9e-48 195.3 178 56.7
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 9.1e-48 194.9 164 61.6
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 9.1e-48 194.9 177 58.2
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 1.5e-47 194.1 161 60.9
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 7.7e-47 191.8 172 58.7
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.0e-46 191.4 158 63.9
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.0e-46 191.4 151 64.2
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 2.2e-46 190.3 171 60.8
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 2.2e-46 190.3 172 59.3
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 6.5e-46 188.7 154 63.0
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 3.2e-45 186.4 168 60.1
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 4.2e-45 186.0 177 56.5
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 4.2e-45 186.0 151 64.2
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 4.2e-45 186.0 155 61.3
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 7.2e-45 185.3 153 62.1
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 1.2e-44 184.5 172 58.7
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 2.1e-44 183.7 152 64.5
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 2.7e-44 183.3 161 60.9
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 3.6e-44 183.0 151 64.2
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 4.7e-44 182.6 166 56.0
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 4.7e-44 182.6 183 56.8
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.0e-43 181.4 152 62.5
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.4e-43 181.0 167 59.9
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 1.8e-43 180.6 162 59.3
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.8e-43 180.6 162 59.3
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 2.3e-43 180.3 153 63.4
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 3.9e-43 179.5 155 58.7
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 2.0e-42 177.2 165 55.8
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.0e-42 177.2 154 60.4
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.0e-42 177.2 154 60.4
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 2.6e-42 176.8 178 53.4
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 4.4e-42 176.0 173 53.8
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 4.4e-42 176.0 173 53.8
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 7.4e-42 175.3 153 64.1
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.2e-41 173.7 170 58.2
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 2.2e-41 173.7 170 55.3
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.8e-41 173.3 154 61.0
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 2.8e-41 173.3 172 55.8
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 3.7e-41 172.9 165 55.8
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 6.3e-41 172.2 177 56.5
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 6.3e-41 172.2 154 58.4
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 6.3e-41 172.2 157 60.5
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 8.2e-41 171.8 151 61.6
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 8.2e-41 171.8 180 55.0
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.4e-40 171.0 177 55.9
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.4e-40 171.0 179 52.5
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 1.8e-40 170.6 151 58.9
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 4.1e-40 169.5 169 54.4
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 4.1e-40 169.5 163 57.1
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 7.0e-40 168.7 174 56.9
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.6e-39 166.8 151 57.0
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 3.5e-39 166.4 165 54.5
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 4.5e-39 166.0 173 56.1
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 5.9e-39 165.6 182 52.2
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 2.2e-38 163.7 175 49.1
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 3.8e-38 162.9 171 50.9
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 5.0e-38 162.5 153 60.1
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 6.5e-38 162.2 162 56.8
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.9e-37 160.6 145 60.0
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 4.2e-37 159.5 154 57.1
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 9.7e-34 148.3 90 81.1
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.8e-32 144.1 159 50.3
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 2.4e-32 143.7 165 47.3
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.2e-30 137.1 97 66.0
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 7.2e-29 132.1 158 46.2
Medtr8g031540 Medicago truncatula HOM05D008402 ORTHO05D000988 9.4e-29 131.7 85 67.1
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 3.6e-28 129.8 146 53.4
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 6.1e-28 129.0 167 43.1
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.0e-28 128.6 157 52.2
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 8.0e-28 128.6 150 46.7
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 1.4e-27 127.9 111 61.3
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.8e-27 127.5 132 50.0
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.8e-27 127.5 191 41.9
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 2.3e-27 127.1 81 76.5
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 3.0e-27 126.7 93 66.7
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 3.0e-27 126.7 82 76.8
Psat5g145680 Pisum sativum HOM05D008402 ORTHO05D000988 1.5e-26 124.4 84 70.2
TPR.G4392 Trifolium pratense HOM05D008402 ORTHO05D000988 2.0e-26 124.0 93 61.3
Psat4g199160 Pisum sativum HOM05D008402 ORTHO05D000988 7.5e-26 122.1 85 69.4
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.7e-25 120.9 90 64.4
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 4.8e-25 119.4 150 46.7
Psat4g199200 Pisum sativum HOM05D008402 ORTHO05D000988 6.3e-25 119.0 85 68.2
TPR.G17585 Trifolium pratense HOM05D008402 ORTHO05D000988 1.1e-24 118.2 84 61.9
Glyma.05G076900 Glycine max HOM05D008402 ORTHO05D000988 9.1e-24 115.2 87 62.1
Glyma.19G071100 Glycine max HOM05D008402 ORTHO05D000988 1.3e-22 111.3 84 59.5
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.7e-22 110.9 232 33.6
TPR.G29356 Trifolium pratense HOM05D008402 ORTHO05D000988 6.5e-22 109.0 85 58.8
Glyma.19G071200 Glycine max HOM05D008402 ORTHO05D000988 2.5e-21 107.1 84 58.3
Phvul.001G071700 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 2.5e-21 107.1 88 56.8
Phvul.004G083300 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 3.2e-21 106.7 84 56.0
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.2e-21 106.3 120 51.7
Glyma.14G153100 Glycine max HOM05D008402 ORTHO05D000988 4.2e-21 106.3 88 56.8
Glyma.13G031400 Glycine max HOM05D008402 ORTHO05D000988 7.2e-21 105.5 84 59.5
Medtr1g054825 Medicago truncatula HOM05D008402 ORTHO05D000988 3.6e-20 103.2 84 56.0
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 4.7e-20 102.8 177 38.4
Lj1g0024978 Lotus japonicus HOM05D008402 ORTHO05D000988 1.4e-19 101.3 84 58.3
Medtr1g054815 Medicago truncatula HOM05D008402 ORTHO05D000988 1.8e-19 100.9 84 54.8
Lj1g0025701 Lotus japonicus HOM05D008402 ORTHO05D000988 1.5e-18 97.8 84 54.8
Lj1g0006941 Lotus japonicus HOM05D008402 ORTHO05D000988 2.0e-18 97.4 84 57.1
Lj1g0020102 Lotus japonicus HOM05D008402 ORTHO05D000988 4.4e-18 96.3 84 54.8
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 4.4e-18 96.3 178 39.3
Glyma.19G054100 Glycine max HOM05D008402 ORTHO05D000988 5.7e-18 95.9 85 50.6
Phvul.001G071800 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 7.5e-18 95.5 85 52.9
VMungo0647G1641 Vigna mungo HOM05D008402 ORTHO05D000988 7.5e-18 95.5 84 53.6
Lj1g0004343 Lotus japonicus HOM05D008402 ORTHO05D000988 9.8e-18 95.1 84 53.6
Lj1g0018072 Lotus japonicus HOM05D008402 ORTHO05D000988 9.8e-18 95.1 84 53.6
Lj1g0003999 Lotus japonicus HOM05D008402 ORTHO05D000988 2.2e-17 94.0 90 53.3
Lj1g0017901 Lotus japonicus HOM05D008402 ORTHO05D000988 2.2e-17 94.0 84 52.4
Lj1g0020175 Lotus japonicus HOM05D008402 ORTHO05D000988 2.2e-17 94.0 84 53.6
Medtr8g011880 Medicago truncatula HOM05D008402 ORTHO05D000988 2.2e-17 94.0 93 49.5
Medtr8g011740 Medicago truncatula HOM05D008402 ORTHO05D000988 6.3e-17 92.4 83 50.6
VMungo0647G2588 Vigna mungo HOM05D008402 ORTHO05D000988 1.1e-16 91.7 83 50.6
VMungo0647G0396 Vigna mungo HOM05D008402 ORTHO05D000988 2.4e-16 90.5 82 51.2
Lj1g0020043 Lotus japonicus HOM05D008402 ORTHO05D000988 9.1e-16 88.6 84 50.0
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 7.7e-15 85.5 90 53.3
Lalb_Chr01g0019651 Lupinus albus HOM05D008402 ORTHO05D000988 1.3e-14 84.7 85 49.4
Lalb_Chr08g0236561 Lupinus albus HOM05D008402 ORTHO05D000988 1.7e-14 84.3 93 44.1
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 2.3e-14 84.0 132 42.4
Glyma.18G066800 Glycine max HOM05D008402 ORTHO05D000988 2.9e-14 83.6 81 43.2
Medtr8g011770 Medicago truncatula HOM05D008402 ORTHO05D000988 3.8e-14 83.2 83 50.6
Phvul.001G065900 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 1.9e-13 80.9 80 47.5
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 4.2e-13 79.7 96 47.9
Medtr8g011760 Medicago truncatula HOM05D008402 ORTHO05D000988 1.2e-12 78.2 83 48.2
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 3.6e-12 76.6 186 30.1
Lj1g0018215 Lotus japonicus HOM05D008402 ORTHO05D000988 2.3e-11 73.9 83 42.2
TPR.G20479 Trifolium pratense HOM05D008402 ORTHO05D000988 1.2e-10 71.6 81 45.7
Phvul.006G064400 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 2.9e-09 67.0 84 35.7
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 3.7e-09 66.6 130 36.9
Lalb_Chr17g0345781 Lupinus albus HOM05D008402 ORTHO05D000988 4.9e-09 66.2 64 45.3
Medtr8g031570 Medicago truncatula HOM05D008402 ORTHO05D000988 2.4e-08 63.9 43 60.5
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 1.2e-07 61.6 122 31.1
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 3.5e-07 60.1 85 34.1
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 5.9e-07 59.3 176 27.8
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 7.8e-07 58.9 78 37.2
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 1.3e-06 58.2 87 34.5
Prupe.6G171100 Prunus persica HOM05D002073 ORTHO05D001803 1.7e-06 57.8 77 39.0
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 2.3e-06 57.4 40 72.5
QL05p012573 Quercus lobata HOM05D008402 ORTHO05D000988 6.6e-06 55.8 80 33.8
Prupe.6G170600 Prunus persica HOM05D002073 ORTHO05D001803 8.6e-06 55.5 84 36.9


User provided reference genes

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