Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40556 Trifolium pratense HOM05D003084 ORTHO05D003580 8.1e-31 136.3 65 100.0
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.7e-28 128.6 65 92.3
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 1.7e-28 128.6 65 92.3
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 8.4e-28 126.3 65 90.8
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 8.4e-28 126.3 63 92.1
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 1.4e-27 125.6 65 89.2
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 1.4e-27 125.6 65 89.2
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.4e-27 125.6 65 89.2
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 3.2e-27 124.4 65 86.2
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 3.2e-27 124.4 65 86.2
Atru.chr7.2124 Acer truncatum HOM05D003084 ORTHO05D003580 3.2e-27 124.4 65 86.2
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 3.2e-27 124.4 65 87.7
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 3.2e-27 124.4 65 87.7
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 5.5e-27 123.6 65 86.2
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 7.1e-27 123.2 64 85.9
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 9.3e-27 122.9 65 87.7
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 9.3e-27 122.9 65 87.7
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 9.3e-27 122.9 65 89.2
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 1.2e-26 122.5 65 86.2
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 1.2e-26 122.5 65 86.2
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 1.6e-26 122.1 65 87.7
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 2.1e-26 121.7 65 87.7
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 2.1e-26 121.7 65 86.2
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 2.1e-26 121.7 65 86.2
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 2.7e-26 121.3 65 87.7
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 3.5e-26 120.9 65 86.2
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 3.5e-26 120.9 65 84.6
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 3.5e-26 120.9 65 86.2
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 3.5e-26 120.9 65 87.7
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 3.5e-26 120.9 65 87.7
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 3.5e-26 120.9 65 87.7
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 4.6e-26 120.6 65 86.2
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 4.6e-26 120.6 65 86.2
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 4.6e-26 120.6 65 86.2
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 84.6
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 83.1
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 83.1
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 84.6
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 84.6
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 83.1
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 84.6
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 84.6
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 86.2
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 6.0e-26 120.2 65 86.2
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 7.9e-26 119.8 65 84.6
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 7.9e-26 119.8 65 86.2
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 7.9e-26 119.8 65 86.2
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 7.9e-26 119.8 65 86.2
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 1.0e-25 119.4 65 83.1
Cpa.g.sc1387.1 Carica papaya HOM05D003084 ORTHO05D003580 1.0e-25 119.4 65 83.1
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 1.0e-25 119.4 65 84.6
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.0e-25 119.4 65 84.6
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 1.0e-25 119.4 65 83.1
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 1.0e-25 119.4 65 83.1
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 1.3e-25 119.0 65 83.1
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 1.3e-25 119.0 65 83.1
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 83.1
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.8e-25 118.6 65 81.5
BcaB04g19964 Brassica carinata HOM05D003084 ORTHO05D003580 2.3e-25 118.2 65 83.1
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 2.3e-25 118.2 65 81.5
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 2.3e-25 118.2 65 83.1
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 2.3e-25 118.2 65 80.0
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 3.0e-25 117.9 65 81.5
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 3.0e-25 117.9 65 81.5
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 3.0e-25 117.9 65 86.2
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 3.0e-25 117.9 65 81.5
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 3.0e-25 117.9 65 81.5
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 3.0e-25 117.9 65 84.6
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 3.9e-25 117.5 65 84.6
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 3.9e-25 117.5 65 84.6
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 3.9e-25 117.5 64 82.8
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 5.1e-25 117.1 65 84.6
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 5.1e-25 117.1 65 84.6
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 5.1e-25 117.1 65 84.6
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 5.1e-25 117.1 65 84.6
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 5.1e-25 117.1 63 84.1
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 5.1e-25 117.1 65 83.1
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 5.1e-25 117.1 65 80.0
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 6.7e-25 116.7 65 84.6
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 6.7e-25 116.7 65 83.1
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 8.7e-25 116.3 65 81.5
Eucgr.L00513 Eucalyptus grandis HOM05D003084 ORTHO05D003580 8.7e-25 116.3 65 81.5
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 8.7e-25 116.3 65 81.5
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 1.1e-24 115.9 65 81.5
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.1e-24 115.9 65 80.0
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.1e-24 115.9 65 80.0
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 1.1e-24 115.9 65 78.5
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.5e-24 115.5 65 78.5
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.5e-24 115.5 65 78.5
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.5e-24 115.5 65 78.5
RcHm_v2.0_Chr5g0043931 Rosa chinensis HOM05D003084 ORTHO05D003580 1.5e-24 115.5 65 83.1
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.5e-24 115.5 65 81.5
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 1.9e-24 115.2 65 81.5
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 1.9e-24 115.2 63 82.5
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 1.9e-24 115.2 63 82.5
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.9e-24 115.2 69 78.3
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.9e-24 115.2 69 78.3
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 1.9e-24 115.2 69 78.3
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.9e-24 115.2 65 80.0
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.9e-24 115.2 65 80.0
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 2.5e-24 114.8 65 81.5
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.5e-24 114.8 62 83.9
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 2.5e-24 114.8 65 81.5
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.3e-24 114.4 65 80.0
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 3.3e-24 114.4 65 81.5
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 4.3e-24 114.0 65 78.5
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 4.3e-24 114.0 65 78.5
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 4.3e-24 114.0 63 81.0
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 5.6e-24 113.6 65 80.0
Oeu042069.1 Olea europaea HOM05D003084 ORTHO05D003580 5.6e-24 113.6 65 78.5
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 9.6e-24 112.8 65 80.0
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 9.6e-24 112.8 65 78.5
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 1.3e-23 112.5 65 78.5
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 1.3e-23 112.5 65 78.5
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.6e-23 112.1 60 85.0
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.6e-23 112.1 66 81.8
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 2.1e-23 111.7 65 76.9
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 2.1e-23 111.7 65 78.5
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 2.1e-23 111.7 65 78.5
DCAR_017866 Daucus carota HOM05D003084 ORTHO05D003580 2.8e-23 111.3 65 76.9
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 2.8e-23 111.3 65 78.5
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.8e-23 111.3 65 78.5
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 2.8e-23 111.3 65 76.9
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.7e-23 110.9 64 78.1
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.8e-23 110.5 65 75.4
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 1.4e-22 109.0 65 76.9
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 4.0e-22 107.5 65 73.8
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 4.0e-22 107.5 66 77.3
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 1.5e-21 105.5 65 70.8
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 1.3e-20 102.4 63 77.8
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 1.7e-20 102.1 53 84.9
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 2.2e-20 101.7 63 74.6
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 6.5e-20 100.1 55 80.0
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 1.4e-19 99.0 65 72.3
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.4e-19 99.0 66 68.2
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.2e-19 97.4 66 66.7
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 9.3e-19 96.3 65 69.2
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 4.6e-18 94.0 50 80.0
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.8e-17 92.0 53 73.6
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 2.8e-15 84.7 80 51.2
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 3.7e-15 84.3 61 63.9
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.5e-13 79.0 67 55.2
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 2.7e-10 68.2 65 50.8


User provided reference genes

Program Settings