Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 1.4e-47 192.6 98 100.0
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 3.6e-30 134.8 62 100.0
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 1.2e-17 93.2 67 64.2
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 2.9e-16 88.6 62 64.5
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 8.5e-16 87.0 62 59.7
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.1e-15 86.7 62 58.1
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.5e-15 86.3 62 62.9
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 2.5e-15 85.5 59 64.4
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 7.2e-15 84.0 56 62.5
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 9.4e-15 83.6 62 59.7
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 2.7e-14 82.0 60 58.3
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.5e-12 76.3 74 45.9
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 1.5e-12 76.3 61 50.8
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 2.0e-12 75.9 56 57.1
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.0e-12 75.9 61 54.1
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 2.6e-12 75.5 56 55.4
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 2.6e-12 75.5 56 55.4
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 2.6e-12 75.5 56 55.4
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.4e-12 74.7 61 54.1
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 4.4e-12 74.7 61 54.1
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 4.4e-12 74.7 62 54.8
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 5.7e-12 74.3 62 50.0
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 5.7e-12 74.3 62 50.0
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 7.5e-12 73.9 59 52.5
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 7.5e-12 73.9 62 50.0
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 7.5e-12 73.9 62 50.0
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 7.5e-12 73.9 56 53.6
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 9.8e-12 73.6 56 53.6
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 9.8e-12 73.6 56 53.6
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.7e-11 72.8 62 50.0
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 2.2e-11 72.4 56 53.6
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 3.7e-11 71.6 56 53.6
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 3.7e-11 71.6 59 50.8
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 3.7e-11 71.6 62 48.4
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.7e-11 71.6 62 53.2
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 3.7e-11 71.6 62 46.8
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 6.3e-11 70.9 59 49.2
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.1e-10 70.1 59 50.8
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.1e-10 70.1 61 49.2
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.4e-10 69.7 59 49.2
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.8e-10 69.3 58 51.7
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.4e-10 68.9 62 48.4
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.4e-10 68.9 56 53.6
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.4e-10 68.9 56 53.6
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.4e-10 68.9 56 53.6
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 4.1e-10 68.2 56 42.9
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 4.1e-10 68.2 56 51.8
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 5.4e-10 67.8 56 50.0
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 7.0e-10 67.4 62 48.4
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 7.0e-10 67.4 62 48.4
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.6e-09 66.2 62 48.4
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-09 66.2 56 50.0
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-09 66.2 56 50.0
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 2.0e-09 65.9 56 50.0
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.0e-09 65.9 56 50.0
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.0e-09 65.9 62 48.4
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.7e-09 65.5 56 46.4
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 5.9e-09 64.3 56 44.6
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 5.9e-09 64.3 56 48.2
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 5.9e-09 64.3 67 41.8
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 7.7e-09 63.9 62 40.3
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.0e-08 63.5 56 46.4
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 1.0e-08 63.5 58 44.8
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.3e-08 63.2 56 42.9
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.3e-08 63.2 56 42.9
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.3e-08 63.2 61 42.6
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.3e-08 63.2 61 42.6
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.7e-08 62.8 61 42.6
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 2.2e-08 62.4 59 42.4
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.9e-08 62.0 56 42.9
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 3.8e-08 61.6 55 45.5
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.8e-08 61.6 66 40.9
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.8e-08 61.6 56 42.9
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 5.0e-08 61.2 56 46.4
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.5e-08 60.8 61 42.6
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 6.5e-08 60.8 53 52.8
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 6.5e-08 60.8 53 52.8
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 6.5e-08 60.8 53 52.8
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 6.5e-08 60.8 53 52.8
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 8.5e-08 60.5 62 41.9
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.1e-07 60.1 61 42.6
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.1e-07 60.1 55 41.8
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.5e-07 59.7 55 47.3
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.9e-07 59.3 61 42.6
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.9e-07 59.3 61 42.6
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 2.5e-07 58.9 60 45.0
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 2.5e-07 58.9 56 46.4
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.1e-06 55.8 51 49.0


User provided reference genes

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