Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39795 Trifolium pratense HOM05D001814 ORTHO05D008710 8.7e-44 179.9 88 100.0
TPR.G28325 Trifolium pratense HOM05D006751 ORTHO05D008710 9.7e-19 96.7 52 88.5
TPR.G29151 Trifolium pratense HOM05D006751 ORTHO05D008710 5.0e-15 84.3 51 76.5
Medtr7g055730 Medicago truncatula HOM05D006751 ORTHO05D008710 2.7e-13 78.6 51 74.5
Medtr7g055720 Medicago truncatula HOM05D006751 ORTHO05D008710 7.4e-11 70.5 51 66.7
Ca_07507_v3 Cicer arietinum L. HOM05D006751 ORTHO05D008710 1.8e-09 65.9 51 68.6
Psat3g149800 Pisum sativum HOM05D006751 ORTHO05D008710 2.2e-07 58.9 52 61.5
Lj1g0007193 Lotus japonicus HOM05D006751 ORTHO05D008710 6.5e-07 57.4 52 61.5
VMungo1383G3158 Vigna mungo HOM05D006751 ORTHO05D008710 8.5e-07 57.0 51 58.8
Cpa.g.sc6.424 Carica papaya HOM05D001814 ORTHO05D001845 1.9e-06 55.8 83 43.4
ECA238G3727 Erigeron canadensis HOM05D001814 ORTHO05D001845 2.5e-06 55.5 70 47.1
ECA248G0801 Erigeron canadensis HOM05D001814 ORTHO05D001845 2.5e-06 55.5 70 47.1
HanXRQChr01g0024071 Helianthus annuus HOM05D001814 ORTHO05D001845 2.5e-06 55.5 70 47.1
HanXRQChr07g0197931 Helianthus annuus HOM05D001814 ORTHO05D001845 2.5e-06 55.5 70 47.1
HanXRQChr11g0346811 Helianthus annuus HOM05D001814 ORTHO05D001845 2.5e-06 55.5 70 47.1
HanXRQChr14g0451591 Helianthus annuus HOM05D001814 ORTHO05D001845 2.5e-06 55.5 70 47.1
Lsat_1_v5_gn_1_59281 Lactuca sativa HOM05D001814 ORTHO05D001845 2.5e-06 55.5 70 47.1
Lsat_1_v5_gn_2_95040 Lactuca sativa HOM05D001814 ORTHO05D001845 2.5e-06 55.5 70 47.1
vmacro03317 Vaccinium macrocarpon HOM05D001814 ORTHO05D001845 2.5e-06 55.5 70 47.1
BcaB02g10094 Brassica carinata HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 50.0
BcaB06g28148 Brassica carinata HOM05D001814 ORTHO05D000489 3.2e-06 55.1 70 50.0
BcaC02g08245 Brassica carinata HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 50.0
BcaC02g10887 Brassica carinata HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 50.0
A04p21000 Brassica napus HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 50.0
A07p18270 Brassica napus HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 50.0
C04p24070 Brassica napus HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 50.0
C04p56780 Brassica napus HOM05D001814 ORTHO05D000489 3.2e-06 55.1 70 50.0
BolC4t23902H Brassica oleracea HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 50.0
BraA04t17668Z Brassica rapa HOM05D001814 ORTHO05D000489 3.2e-06 55.1 70 50.0
BraA07t29543Z Brassica rapa HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 50.0
Carub.0004s0819 Capsella rubella HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 50.0
Rhsim13G0111500 Rhododendron simsii HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 47.1
Solyc11g068420.2 Solanum lycopersicum HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 47.1
Sopen11g027130 Solanum pennellii HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 47.1
PGSC0003DMG400026361 Solanum tuberosum HOM05D001814 ORTHO05D001845 3.2e-06 55.1 70 47.1
ATR0580G207 Amborella trichopoda HOM05D001814 ORTHO05D001845 4.2e-06 54.7 70 47.1
ATR0721G061 Amborella trichopoda HOM05D001814 ORTHO05D001845 4.2e-06 54.7 70 47.1
CDE07G0896 Ceratophyllum demersum HOM05D001814 ORTHO05D001845 4.2e-06 54.7 70 47.1
Hma1.2p1_0084F.1_g043790 Hydrangea macrophylla HOM05D001814 ORTHO05D001845 4.2e-06 54.7 70 47.1
Lalb_Chr06g0172231 Lupinus albus HOM05D001814 ORTHO05D001845 4.2e-06 54.7 70 47.1
Lalb_Chr06g0172351 Lupinus albus HOM05D001814 ORTHO05D001845 4.2e-06 54.7 70 47.1
Lalb_Chr21g0315811 Lupinus albus HOM05D001814 ORTHO05D001845 4.2e-06 54.7 70 47.1
Phvul.008G132700 Phaseolus vulgaris HOM05D006751 ORTHO05D008710 4.2e-06 54.7 51 56.9
vmacro07407 Vaccinium macrocarpon HOM05D001814 ORTHO05D001845 4.2e-06 54.7 70 47.1
vmacro14350 Vaccinium macrocarpon HOM05D001814 ORTHO05D001845 4.2e-06 54.7 70 47.1
Actinidia07249 Actinidia chinensis HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 45.7
Actinidia24216 Actinidia chinensis HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 45.7
Actinidia35465 Actinidia chinensis HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 45.7
BolC5t29411H Brassica oleracea HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 48.6
CSS0048475 Camellia sinensis var. sinensis HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 45.7
CSS0050139 Camellia sinensis var. sinensis HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 45.7
CiPaw.10G009600 Carya illinoinensis HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 45.7
CDE02G4453 Ceratophyllum demersum HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 47.1
Dinv42554 Davidia involucrata HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 45.7
MBI17_g08355_MAGBIO Magnolia biondii HOM05D001814 ORTHO05D001845 5.5e-06 54.3 70 47.1
arahy.Tifrunner.gnm1.ann1.G3JQSN Arachis hypogaea HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
arahy.Tifrunner.gnm1.ann1.I01BWW Arachis hypogaea HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
CDE12G0622 Ceratophyllum demersum HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 47.1
Cc06_g05730 Coffea canephora HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
MBI12_g15039_MAGBIO Magnolia biondii HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 47.1
Mapoly0006s0241 Marchantia polymorpha HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
Mapoly0006s0264 Marchantia polymorpha HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
Medtr3g070930 Medicago truncatula HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 47.1
Nn2g12591 Nelumbo nucifera HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
Nn8g40277 Nelumbo nucifera HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
Os01g0860300 Oryza sativa ssp. japonica HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
Os02g0321900 Oryza sativa ssp. japonica HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
Thecc.05G088900 Theobroma cacao HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
TPR.G11206 Trifolium pratense HOM05D001814 ORTHO05D002702 7.2e-06 53.9 70 47.1
TAR365G0036 Trochodendron aralioides HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
TAR369G1124 Trochodendron aralioides HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
TAR623G1663 Trochodendron aralioides HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
TAR633G1113 Trochodendron aralioides HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
TAR636G2278 Trochodendron aralioides HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
GSVIVG01033841001 Vitis vinifera HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
Zm00001eb147170 Zea mays HOM05D001814 ORTHO05D001845 7.2e-06 53.9 70 45.7
A06p05380 Brassica napus HOM05D001814 ORTHO05D001845 9.4e-06 53.5 70 48.6
COL.COLO4_29736 Corchorus olitorius HOM05D001814 ORTHO05D001845 9.4e-06 53.5 70 45.7
Glyma.19G194922 Glycine max HOM05D001814 ORTHO05D001845 9.4e-06 53.5 70 45.7
Manes.04G003500 Manihot esculenta HOM05D001814 ORTHO05D001845 9.4e-06 53.5 70 45.7
Manes.11G161800 Manihot esculenta HOM05D001814 ORTHO05D001845 9.4e-06 53.5 70 45.7


User provided reference genes

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