Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 2.0e-98 362.5 185 100.0
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 7.6e-90 334.0 185 90.8
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 2.9e-89 332.0 185 90.8
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 8.1e-84 313.9 185 84.3
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 1.2e-82 310.1 185 83.2
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 3.4e-82 308.5 189 84.7
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 3.4e-82 308.5 188 83.0
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 8.4e-81 303.9 188 84.0
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.1e-77 293.5 186 79.0
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 2.1e-76 289.3 183 78.1
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 4.8e-76 288.1 185 77.3
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 4.8e-76 288.1 185 77.3
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 4.8e-76 288.1 185 77.3
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 4.8e-76 288.1 185 76.8
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 6.2e-76 287.7 185 77.3
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 1.1e-75 287.0 185 76.8
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 1.4e-75 286.6 186 76.3
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 1.8e-75 286.2 183 77.6
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 4.0e-75 285.0 186 74.7
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 4.0e-75 285.0 185 75.7
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 4.5e-74 281.6 185 75.1
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.3e-73 280.0 186 74.2
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.3e-73 280.0 185 76.8
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.7e-73 279.6 185 74.6
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.7e-73 279.6 185 76.8
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 2.9e-73 278.9 185 74.6
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.9e-73 278.9 185 76.2
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 3.8e-73 278.5 185 75.7
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 3.8e-73 278.5 185 74.1
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 4.9e-73 278.1 183 75.4
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 1.1e-72 276.9 185 74.6
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 1.4e-72 276.6 185 75.7
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 1.9e-72 276.2 184 76.6
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.9e-72 276.2 183 74.3
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 2.4e-72 275.8 185 75.7
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 3.2e-72 275.4 184 76.1
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 3.2e-72 275.4 187 74.3
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 5.4e-72 274.6 185 75.7
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.2e-71 273.5 185 76.8
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 2.7e-71 272.3 184 73.4
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 6.0e-71 271.2 185 75.7
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 6.0e-71 271.2 183 73.2
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 7.9e-71 270.8 185 75.1
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 1.3e-70 270.0 183 73.8
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.8e-70 269.6 182 75.3
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 2.3e-70 269.2 185 75.7
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.0e-70 268.9 184 74.5
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 1.1e-69 266.9 185 73.0
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 3.3e-69 265.4 185 73.0
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 5.6e-69 264.6 176 75.0
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 5.6e-69 264.6 183 72.1
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 7.4e-69 264.2 177 74.0
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 7.4e-69 264.2 184 71.7
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 7.4e-69 264.2 182 72.0
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 7.4e-69 264.2 182 75.8
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 1.3e-68 263.5 182 73.1
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 1.3e-68 263.5 183 71.6
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 3.6e-68 261.9 171 75.4
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 3.6e-68 261.9 212 67.0
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 6.2e-68 261.2 196 67.9
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 8.1e-68 260.8 185 70.8
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 8.1e-68 260.8 184 67.9
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 1.8e-67 259.6 182 74.7
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.4e-67 259.2 182 74.2
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 3.1e-67 258.8 184 70.1
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 4.0e-67 258.5 182 72.5
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 2.0e-66 256.1 185 71.4
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 3.4e-66 255.4 184 69.0
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 5.8e-66 254.6 184 68.5
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.3e-65 253.4 185 70.8
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 1.3e-65 253.4 183 69.9
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.7e-65 253.1 185 69.7
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.4e-64 250.0 183 73.2
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 2.4e-64 249.2 182 70.3
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.2e-64 248.8 184 66.8
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 5.5e-64 248.1 183 68.3
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 7.1e-64 247.7 184 70.1
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 7.1e-64 247.7 171 71.3
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 7.9e-63 244.2 184 66.3
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 1.3e-62 243.4 184 67.9
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.3e-62 243.4 184 65.8
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.9e-61 239.6 185 66.5
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 3.7e-60 235.3 184 64.1
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 3.7e-60 235.3 184 66.3
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 4.0e-59 231.9 175 68.6
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 6.9e-59 231.1 184 64.7
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 9.0e-59 230.7 151 75.5
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.5e-58 229.9 185 62.2
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 4.5e-58 228.4 183 64.5
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.3e-57 226.9 184 64.1
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 1.3e-57 226.9 184 64.1
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 8.4e-57 224.2 184 64.1
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 7.9e-55 217.6 184 60.9
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.3e-54 216.9 184 61.4
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.3e-54 216.9 131 81.7
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 1.8e-54 216.5 184 63.0
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 6.7e-54 214.5 160 67.5
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 1.1e-53 213.8 184 59.8
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 1.9e-53 213.0 184 60.3
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 1.9e-53 213.0 184 59.8
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 5.7e-53 211.5 132 76.5
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 3.1e-51 205.7 194 57.2
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 3.2e-48 195.7 103 95.1
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 7.2e-48 194.5 221 49.8
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.9e-40 169.9 196 48.0
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 8.8e-38 161.0 98 79.6
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.1e-37 160.6 95 78.9
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.3e-37 159.1 94 78.7
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 4.4e-37 158.7 94 79.8
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 2.2e-36 156.4 193 49.2
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 3.7e-36 155.6 140 56.4
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 3.1e-35 152.5 142 54.9
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.0e-33 147.5 94 72.3
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 7.9e-31 137.9 93 74.2
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 1.4e-27 127.1 80 73.8
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 4.1e-27 125.6 135 57.8
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 6.5e-25 118.2 114 58.8
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 1.5e-24 117.1 169 41.4
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 5.5e-24 115.2 90 65.6
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 2.3e-22 109.8 88 59.1
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.3e-17 94.0 58 75.9
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 6.1e-15 85.1 58 70.7
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 2.3e-14 83.2 68 60.3
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 1.3e-12 77.4 54 68.5
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 5.9e-10 68.6 60 61.7
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 1.1e-08 64.3 64 53.1
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 3.2e-08 62.8 65 55.4
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 4.2e-08 62.4 81 37.0


User provided reference genes

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