Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 7.5e-135 483.8 235 100.0
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 8.3e-118 427.2 227 90.7
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.6e-116 422.9 227 90.3
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.8e-112 409.5 227 88.1
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.9e-110 402.1 227 85.9
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 2.6e-103 379.0 226 81.0
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 3.8e-102 375.2 226 80.5
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.3e-97 360.1 229 75.5
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 4.9e-94 348.2 223 77.6
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 6.4e-94 347.8 224 76.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 2.1e-92 342.8 220 76.4
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 2.8e-89 332.4 226 72.1
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 8.1e-89 330.9 225 70.7
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 9.0e-88 327.4 227 69.2
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 2.6e-87 325.9 223 71.3
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.2e-86 322.8 216 71.3
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.8e-86 322.0 227 68.3
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.8e-86 322.0 221 70.1
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.8e-86 322.0 221 70.1
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.1e-85 320.5 221 70.1
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.1e-85 320.5 222 68.5
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 7.1e-85 317.8 221 69.7
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 3.5e-84 315.5 221 69.2
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 6.0e-84 314.7 226 71.7
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 1.0e-83 313.9 220 70.0
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 3.0e-83 312.4 216 70.4
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 3.0e-83 312.4 223 66.4
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 4.3e-82 308.5 220 68.6
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.1e-81 306.2 225 68.0
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 6.2e-81 304.7 222 65.3
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 8.1e-81 304.3 221 67.4
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 1.1e-80 303.9 221 66.1
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 1.2e-79 300.4 220 65.9
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 3.4e-79 298.9 224 64.7
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.7e-78 296.6 215 66.0
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.7e-78 296.6 221 66.1
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 4.9e-78 295.0 219 65.3
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 6.5e-78 294.7 219 68.0
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 6.5e-78 294.7 231 62.8
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.1e-77 293.9 221 66.1
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 1.4e-77 293.5 216 65.3
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 1.9e-77 293.1 221 66.1
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.2e-77 292.0 221 65.6
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 7.1e-77 291.2 216 64.8
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.1e-76 289.7 218 63.8
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 2.1e-76 289.7 222 62.2
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.5e-76 288.9 218 63.3
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 4.6e-76 288.5 215 65.1
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 4.6e-76 288.5 222 66.2
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 6.0e-76 288.1 216 64.4
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.0e-75 287.3 220 64.1
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.0e-75 287.3 230 62.2
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.0e-75 287.3 229 64.2
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.0e-75 287.3 224 62.5
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.0e-75 287.3 221 63.8
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 2.3e-75 286.2 215 63.3
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 2.3e-75 286.2 221 65.2
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 2.3e-75 286.2 223 64.1
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 3.0e-75 285.8 215 63.3
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 3.9e-75 285.4 221 62.4
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.9e-75 285.4 234 62.0
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 5.1e-75 285.0 216 64.8
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 5.1e-75 285.0 222 61.7
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 6.7e-75 284.6 223 63.7
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.1e-74 283.9 213 64.8
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.1e-74 283.9 224 62.5
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 1.1e-74 283.9 208 68.8
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.9e-74 283.1 291 51.5
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.9e-74 283.1 219 64.4
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 4.3e-74 282.0 224 62.5
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 7.4e-74 281.2 216 63.9
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 7.4e-74 281.2 216 63.9
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 3.7e-73 278.9 221 61.1
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 6.3e-73 278.1 221 60.6
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.4e-72 276.9 189 73.0
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 6.9e-72 274.6 216 63.9
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 1.1e-69 267.3 217 63.6
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.1e-69 267.3 250 57.2
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.9e-69 266.5 183 70.5
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.9e-69 266.5 213 65.7
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.0e-67 260.8 207 63.3
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.8e-67 260.0 213 62.4
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 3.0e-67 259.2 220 60.5
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.1e-66 257.3 222 57.2
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 3.3e-66 255.8 234 55.6
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.6e-65 253.4 235 57.0
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.1e-64 250.8 189 65.6
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 5.3e-64 248.4 234 55.1
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.0e-64 247.7 182 65.9
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 7.7e-63 244.6 208 60.6
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.7e-62 243.4 185 64.3
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.9e-61 240.0 186 62.4
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 9.4e-61 237.7 160 73.1
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.2e-60 237.3 161 71.4
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 6.7e-59 231.5 159 69.2
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 2.0e-58 229.9 160 70.0
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 8.2e-57 224.6 183 61.7
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 3.4e-55 219.2 182 57.7
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.0e-54 217.6 221 52.5
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 8.5e-54 214.5 162 68.5
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 9.4e-53 211.1 120 87.5
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 1.2e-52 210.7 158 67.1
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 6.1e-52 208.4 151 68.2
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.4e-51 207.2 196 55.6
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 3.7e-49 199.1 157 66.9
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 3.7e-49 199.1 243 46.1
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 2.2e-46 189.9 219 47.9
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 9.7e-42 174.5 193 49.2
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.7e-41 173.7 262 39.7
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 3.7e-41 172.6 144 61.1
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.2e-39 167.5 170 49.4
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.0e-38 164.5 235 44.7
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 5.7e-34 148.7 111 62.2
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 9.8e-34 147.9 122 54.9
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 1.7e-33 147.1 129 56.6
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.1e-32 144.4 224 41.1
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 9.1e-32 141.4 91 78.0
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.1e-32 141.4 108 60.2
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.5e-29 132.1 94 71.3
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 4.7e-28 129.0 94 69.1
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 7.0e-24 115.2 87 69.0
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 4.3e-21 105.9 135 45.2
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 5.6e-21 105.5 102 51.0
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.1e-20 103.6 350 26.9
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 9.2e-16 88.2 186 33.3
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 5.9e-15 85.5 185 36.2
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 3.9e-14 82.8 205 31.7
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 2.3e-11 73.6 59 62.7
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 7.5e-10 68.6 61 50.8
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 6.4e-09 65.5 57 57.9
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.6e-07 60.8 43 67.4
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 5.0e-06 55.8 45 57.8
Actinidia27239 Actinidia chinensis HOM05D005745 ORTHO05D006857 8.6e-06 55.1 66 48.5


User provided reference genes

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