Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 9.8e-29 129.4 64 100.0
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 9.8e-29 129.4 64 100.0
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 9.8e-29 129.4 64 100.0
TPR.G39457 Trifolium pratense HOM05D002696 ORTHO05D003940 9.8e-29 129.4 64 100.0
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 8.3e-28 126.3 64 96.9
FvH4_7g27331 Fragaria vesca HOM05D002696 ORTHO05D003940 8.3e-28 126.3 64 96.9
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 8.3e-28 126.3 64 96.9
FvH4_7g27643 Fragaria vesca HOM05D002696 ORTHO05D003940 8.3e-28 126.3 64 96.9
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 8.3e-28 126.3 64 96.9
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 8.3e-28 126.3 64 96.9
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 8.3e-28 126.3 64 96.9
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 8.3e-28 126.3 64 96.9
Lalb_Chr01g0008021 Lupinus albus HOM05D002696 ORTHO05D003940 1.8e-27 125.2 64 96.9
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 1.8e-27 125.2 64 96.9
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 3.1e-27 124.4 64 95.3
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 4.1e-27 124.0 64 95.3
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 4.1e-27 124.0 64 95.3
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 5.4e-27 123.6 64 95.3
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 5.4e-27 123.6 64 95.3
FAN10G3229 Fragaria x ananassa HOM05D007222 ORTHO05D010132 5.4e-27 123.6 63 95.2
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 7.0e-27 123.2 64 93.8
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 1.2e-26 122.5 64 93.8
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.2e-26 122.5 64 93.8
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 1.2e-26 122.5 64 93.8
Solyc03g093260.3 Solanum lycopersicum HOM05D002696 ORTHO05D003940 1.2e-26 122.5 64 93.8
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 1.2e-26 122.5 64 93.8
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.6e-26 122.1 63 93.7
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 2.0e-26 121.7 64 93.8
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 2.0e-26 121.7 64 93.8
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 2.0e-26 121.7 64 93.8
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 2.0e-26 121.7 65 95.4
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 2.0e-26 121.7 65 95.4
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 2.7e-26 121.3 64 93.8
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 2.7e-26 121.3 64 93.8
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 2.7e-26 121.3 64 93.8
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 2.7e-26 121.3 64 93.8
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 2.7e-26 121.3 64 93.8
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 2.7e-26 121.3 64 93.8
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 4.5e-26 120.6 64 92.2
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 4.5e-26 120.6 64 92.2
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 4.5e-26 120.6 64 92.2
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 4.5e-26 120.6 64 92.2
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 4.5e-26 120.6 64 92.2
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 4.5e-26 120.6 64 92.2
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 4.5e-26 120.6 65 95.4
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 4.5e-26 120.6 65 95.4
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 4.5e-26 120.6 65 95.4
FAN01G1139 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.5e-26 120.6 64 93.8
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 4.5e-26 120.6 65 95.4
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 4.5e-26 120.6 65 95.4
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 4.5e-26 120.6 65 95.4
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 4.5e-26 120.6 64 92.2
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 4.5e-26 120.6 65 95.4
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 4.5e-26 120.6 65 95.4
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 5.9e-26 120.2 64 92.2
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 5.9e-26 120.2 65 93.8
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 5.9e-26 120.2 64 92.2
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 5.9e-26 120.2 65 93.8
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 5.9e-26 120.2 61 95.1
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 7.7e-26 119.8 64 92.2
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 1.0e-25 119.4 65 93.8
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 1.0e-25 119.4 65 93.8
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 1.0e-25 119.4 62 93.5
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 1.0e-25 119.4 65 93.8
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 1.0e-25 119.4 65 93.8
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 1.0e-25 119.4 65 93.8
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 1.0e-25 119.4 65 93.8
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 1.0e-25 119.4 64 90.6
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 1.0e-25 119.4 65 93.8
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.3e-25 119.0 65 93.8
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.3e-25 119.0 65 93.8
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.3e-25 119.0 61 95.1
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 1.3e-25 119.0 64 90.6
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 1.3e-25 119.0 64 90.6
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 1.7e-25 118.6 64 92.2
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 1.7e-25 118.6 64 92.2
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 1.7e-25 118.6 64 92.2
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 1.7e-25 118.6 66 92.4
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 1.7e-25 118.6 65 93.8
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 1.7e-25 118.6 65 93.8
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 1.7e-25 118.6 65 93.8
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 1.7e-25 118.6 65 93.8
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 1.7e-25 118.6 65 93.8
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 1.7e-25 118.6 65 93.8
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 1.7e-25 118.6 64 90.6
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 1.7e-25 118.6 65 93.8
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.7e-25 118.6 65 93.8
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 1.7e-25 118.6 65 93.8
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 2.3e-25 118.2 64 92.2
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 2.3e-25 118.2 63 95.2
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 2.3e-25 118.2 65 93.8
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 2.9e-25 117.9 60 95.0
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 2.9e-25 117.9 65 92.3
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 2.9e-25 117.9 65 93.8
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 2.9e-25 117.9 65 92.3
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 3.8e-25 117.5 62 91.9
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 3.8e-25 117.5 59 96.6
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 3.8e-25 117.5 62 91.9
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 3.8e-25 117.5 62 91.9
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 3.8e-25 117.5 65 92.3
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 3.8e-25 117.5 64 90.6
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 3.8e-25 117.5 59 96.6
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 3.8e-25 117.5 59 96.6
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 5.0e-25 117.1 64 90.6
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 5.0e-25 117.1 61 93.4
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 5.0e-25 117.1 61 93.4
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 5.0e-25 117.1 61 93.4
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 5.0e-25 117.1 65 92.3
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 6.6e-25 116.7 62 90.3
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 6.6e-25 116.7 59 96.6
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 6.6e-25 116.7 59 96.6
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 6.6e-25 116.7 64 89.1
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 8.6e-25 116.3 65 89.2
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 1.1e-24 115.9 60 93.3
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 1.1e-24 115.9 62 88.7
FAN10G3693 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.9e-24 115.2 58 94.8
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 2.5e-24 114.8 65 89.2
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 2.5e-24 114.8 62 90.3
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 2.5e-24 114.8 64 90.6
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 2.5e-24 114.8 65 90.8
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 3.3e-24 114.4 64 87.5
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 3.3e-24 114.4 57 96.5
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 3.3e-24 114.4 63 92.1
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 4.3e-24 114.0 61 91.8
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 5.6e-24 113.6 61 88.5
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 5.6e-24 113.6 64 85.9
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 7.3e-24 113.2 58 93.1
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 7.3e-24 113.2 64 85.9
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 7.3e-24 113.2 64 85.9
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 9.5e-24 112.8 64 85.9
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 9.5e-24 112.8 58 93.1
Aqoxy7G02845 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 1.6e-23 112.1 64 84.4
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 1.6e-23 112.1 61 90.2
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 2.8e-23 111.3 57 93.0
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 4.7e-23 110.5 57 93.0
Actinidia20692 Actinidia chinensis HOM05D002696 ORTHO05D003940 4.0e-22 107.5 60 90.0
PRCOL_00001774 Prasinoderma coloniale HOM05D002696 ORTHO05D003940 5.2e-22 107.1 63 81.0
MCO13G593 Micromonas commoda HOM05D002696 ORTHO05D003940 6.8e-22 106.7 58 87.9
FAN10G0536 Fragaria x ananassa HOM05D000009 ORTHO05D000008 8.9e-22 106.3 68 80.9
Cre02.g086650 Chlamydomonas reinhardtii HOM05D002696 ORTHO05D003940 1.3e-20 102.4 58 84.5
FAN06G2045 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.7e-18 94.7 48 95.8
CBR_g40808 Chara braunii HOM05D002696 ORTHO05D003940 3.0e-17 91.3 46 91.3
SEGI_11617 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 1.2e-15 85.9 49 89.8
Cfa024848 Carpinus fangiana HOM05D002696 ORTHO05D003940 4.7e-15 84.0 55 72.7
FvH4_7g28372 Fragaria vesca HOM05D002696 ORTHO05D023279 3.4e-13 77.8 40 97.5
FAN06G0913 Fragaria x ananassa HOM05D002696 ORTHO05D019089 3.4e-13 77.8 40 97.5
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.4e-13 77.8 40 97.5
SalBow8G2689 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.9e-11 72.0 37 94.6
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 1.6e-10 68.9 35 91.4
FAN06G0900 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.4e-06 55.8 26 92.3
FAN06G4355 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.0e-06 54.3 36 66.7
FAN06G3863 Fragaria x ananassa HOM05D002696 ORTHO05D011600 6.8e-06 53.5 26 88.5


User provided reference genes

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