Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 4.2e-273 944.9 835 100.0
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 2.3e-117 427.6 342 81.3
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.9e-116 424.5 323 82.0
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.7e-109 401.4 345 77.1
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 6.2e-107 392.9 215 96.7
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 4.0e-106 390.2 318 78.6
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.9e-103 381.3 276 83.7
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.0e-101 375.6 214 93.0
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 1.3e-101 375.2 211 94.3
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.7e-101 374.8 211 93.8
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 3.3e-100 370.5 216 89.8
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 2.4e-98 364.4 211 92.4
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.7e-96 358.2 216 87.0
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 3.8e-96 357.1 216 85.6
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 3.8e-96 357.1 298 77.9
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 1.9e-95 354.8 226 85.4
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 5.4e-95 353.2 299 72.6
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.2e-94 352.1 264 76.1
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.6e-94 351.7 215 87.4
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 2.7e-94 350.9 217 84.8
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 2.7e-94 350.9 209 87.6
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 4.6e-94 350.1 210 86.7
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 6.0e-94 349.7 220 84.5
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.0e-93 349.0 274 77.4
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 1.7e-93 348.2 309 68.0
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.7e-93 348.2 211 86.3
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.7e-93 348.2 212 84.0
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 3.9e-93 347.1 214 86.4
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 5.1e-93 346.7 208 84.1
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 6.6e-93 346.3 242 79.3
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 6.6e-93 346.3 267 75.7
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 8.7e-93 345.9 213 85.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 8.7e-93 345.9 262 78.2
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 8.7e-93 345.9 242 78.1
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 3.3e-92 344.0 213 85.4
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 3.3e-92 344.0 343 66.2
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 3.3e-92 344.0 269 76.6
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 4.3e-92 343.6 213 85.0
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 4.3e-92 343.6 298 73.5
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 4.3e-92 343.6 290 68.6
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 4.3e-92 343.6 207 87.9
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.6e-92 342.4 216 82.4
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.6e-92 342.4 216 82.4
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.3e-91 342.0 213 84.5
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-91 342.0 216 82.4
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-91 342.0 216 82.4
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 2.8e-91 340.9 216 81.9
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 2.8e-91 340.9 208 86.1
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 3.6e-91 340.5 209 84.7
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.4e-90 338.6 214 84.1
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.4e-90 338.6 258 78.3
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 1.4e-90 338.6 257 76.7
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.4e-90 337.8 258 78.3
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 2.4e-90 337.8 211 82.5
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 2.4e-90 337.8 213 85.9
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 4.0e-90 337.0 351 65.0
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 9.0e-90 335.9 346 62.1
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.2e-89 335.5 210 83.3
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.2e-89 335.5 266 74.8
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 2.6e-89 334.3 209 83.3
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 3.4e-89 334.0 277 75.1
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.5e-89 333.6 267 76.8
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 4.5e-89 333.6 215 81.4
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 7.6e-89 332.8 299 71.6
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.3e-88 332.0 374 63.4
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.7e-88 331.6 280 71.1
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 2.2e-88 331.3 296 72.0
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 2.2e-88 331.3 277 71.8
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.9e-88 330.9 282 72.7
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.9e-88 330.9 282 72.7
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 3.8e-88 330.5 245 78.0
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 3.8e-88 330.5 215 78.6
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.1e-87 328.9 309 66.0
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.9e-87 328.2 296 71.6
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.9e-87 328.2 296 71.6
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 4.2e-87 327.0 284 73.2
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 5.4e-87 326.6 213 80.3
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.2e-86 325.5 206 81.6
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 2.7e-86 324.3 217 78.8
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 3.5e-86 323.9 352 60.5
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.9e-85 320.5 196 86.7
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 5.1e-85 320.1 253 71.9
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 4.3e-84 317.0 202 82.2
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 5.6e-84 316.6 195 82.6
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 4.0e-82 310.5 310 58.4
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.0e-81 308.1 272 62.1
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 9.9e-81 305.8 266 71.4
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 8.4e-80 302.8 371 58.8
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.5e-79 301.2 197 80.7
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 5.5e-79 300.1 267 66.7
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 2.7e-78 297.7 265 62.3
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 4.6e-78 297.0 225 75.6
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-77 294.7 186 81.7
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 4.3e-76 290.4 185 81.6
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 8.2e-75 286.2 235 74.5
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 5.8e-73 280.0 313 61.7
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 7.6e-73 279.6 217 65.9
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 6.0e-70 270.0 205 66.8
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.6e-67 261.9 189 70.9
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 6.3e-67 260.0 277 59.2
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.4e-66 258.8 198 69.7
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 5.0e-64 250.4 156 85.9
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.7e-62 244.6 188 70.2
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.8e-61 241.9 171 74.9
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 3.0e-61 241.1 178 74.7
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 4.3e-60 237.3 317 47.9
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 6.1e-54 216.9 235 59.1
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.6e-41 174.9 156 58.3
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 8.5e-32 143.3 115 61.7
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.5e-31 142.5 94 78.7
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.2e-30 139.4 103 77.7
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 4.8e-27 127.5 199 39.7
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 1.3e-24 119.4 79 75.9
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.7e-24 119.0 82 79.3
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 8.6e-24 116.7 64 93.8
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 3.3e-23 114.8 221 34.8
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 6.1e-22 110.5 74 75.7
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 6.8e-21 107.1 63 81.0
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 8.3e-19 100.1 56 89.3
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.6e-17 95.9 180 37.2
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.3e-16 92.8 63 73.0
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.9e-16 91.3 107 47.7
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 5.0e-16 90.9 71 66.2
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 6.6e-16 90.5 183 41.0
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.1e-15 89.7 168 36.3
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 2.5e-15 88.6 63 73.0
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 2.8e-14 85.1 95 45.3
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.8e-14 85.1 95 45.3
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 6.8e-13 80.5 159 36.5
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 2.0e-12 79.0 127 53.5
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 1.2e-09 69.7 63 63.5
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 1.5e-07 62.8 35 82.9
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 3.3e-07 61.6 36 77.8


User provided reference genes

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