Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 4.3e-154 549.3 299 100.0
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 6.7e-131 472.2 298 81.9
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.2e-124 451.4 298 82.2
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.2e-124 451.4 298 82.2
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 2.1e-124 450.7 298 84.6
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 6.3e-113 412.5 299 73.9
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 2.9e-110 403.7 299 73.6
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.1e-109 401.7 299 68.6
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 1.5e-109 401.4 300 70.7
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 3.6e-108 396.7 298 70.8
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 1.4e-107 394.8 301 70.4
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 4.0e-107 393.3 304 71.1
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 1.5e-101 374.8 250 75.6
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 8.0e-92 342.4 312 61.2
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 5.2e-91 339.7 312 62.2
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 5.2e-91 339.7 320 57.8
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 6.8e-91 339.3 239 77.8
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 2.6e-90 337.4 242 71.1
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 2.6e-90 337.4 305 60.0
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 2.6e-90 337.4 248 69.4
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 9.8e-90 335.5 248 69.4
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 1.7e-89 334.7 233 73.0
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 2.2e-89 334.3 258 71.7
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 3.7e-89 333.6 299 61.9
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 3.7e-89 333.6 309 59.9
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 4.9e-89 333.2 243 74.1
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 4.9e-89 333.2 243 74.1
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 4.9e-89 333.2 242 73.1
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 8.3e-89 332.4 238 71.4
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 1.9e-88 331.3 243 70.0
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.4e-88 330.9 309 59.5
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 4.1e-88 330.1 250 66.4
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 5.4e-88 329.7 297 61.3
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 7.0e-88 329.3 315 60.6
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 4.6e-87 326.6 242 71.5
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 3.9e-86 323.6 241 68.5
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 3.9e-86 323.6 289 62.6
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 5.0e-86 323.2 239 72.8
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 3.3e-85 320.5 238 68.5
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 7.3e-85 319.3 230 70.0
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 1.2e-84 318.5 230 70.0
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.6e-84 318.2 239 71.5
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 2.8e-84 317.4 243 65.0
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 3.6e-84 317.0 243 66.3
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 3.6e-84 317.0 230 70.0
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 6.2e-84 316.2 230 69.6
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.4e-83 315.1 229 71.2
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 4.0e-83 313.5 242 65.7
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 4.0e-83 313.5 241 71.8
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 5.2e-83 313.2 239 66.9
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 5.2e-83 313.2 242 65.3
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.5e-82 311.6 243 67.9
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 2.0e-82 311.2 242 64.5
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 2.0e-82 311.2 305 58.4
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 2.6e-82 310.8 242 66.1
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 3.4e-82 310.5 287 60.3
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 4.4e-82 310.1 243 66.3
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 7.5e-82 309.3 239 66.5
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 9.8e-82 308.9 241 64.3
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 9.8e-82 308.9 254 63.8
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 9.8e-82 308.9 243 65.4
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 1.3e-81 308.5 253 62.8
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 1.3e-81 308.5 229 68.6
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 2.2e-81 307.8 242 64.0
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 2.9e-81 307.4 239 66.1
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 4.9e-81 306.6 232 65.9
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 4.9e-81 306.6 304 54.9
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 4.9e-81 306.6 304 54.9
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 8.3e-81 305.8 244 70.1
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 1.1e-80 305.4 245 64.5
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 2.4e-80 304.3 230 66.5
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 3.2e-80 303.9 242 64.9
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 5.4e-80 303.1 237 65.8
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 7.0e-80 302.8 237 65.8
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 9.2e-80 302.4 242 62.8
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 9.2e-80 302.4 242 62.8
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 9.2e-80 302.4 242 62.8
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 9.2e-80 302.4 238 65.5
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 9.2e-80 302.4 240 65.4
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 2.7e-79 300.8 243 63.8
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 6.0e-79 299.7 298 54.7
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 1.7e-78 298.1 236 64.8
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 3.0e-78 297.4 231 70.6
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 5.1e-78 296.6 237 63.7
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 8.6e-78 295.8 298 54.7
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 9.5e-77 292.4 241 62.7
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.2e-76 292.0 304 52.0
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 1.6e-76 291.6 228 65.4
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 6.2e-76 289.7 202 68.8
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 1.7e-73 281.6 230 63.9
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 6.4e-73 279.6 237 62.4
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.6e-71 275.0 293 51.9
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 2.7e-71 274.2 241 59.8
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 4.6e-71 273.5 242 62.4
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 3.0e-70 270.8 243 60.1
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 1.5e-69 268.5 248 57.3
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 5.6e-69 266.5 251 57.4
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 2.7e-63 247.7 241 53.9
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 1.2e-58 232.3 151 76.2
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 4.9e-57 226.9 171 69.6
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 6.0e-47 193.4 175 59.4
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 1.1e-45 189.1 146 62.3
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 1.0e-41 176.0 299 37.5
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 6.9e-35 153.3 194 41.2
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 6.5e-33 146.7 185 45.4
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.1e-24 119.4 194 34.5
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 3.3e-21 107.8 172 34.3
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.3e-20 105.9 170 31.8
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 2.2e-20 105.1 241 31.1
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 5.3e-19 100.5 237 32.9
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 5.9e-10 70.5 55 60.0
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 1.9e-08 65.5 106 30.2
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.7e-07 60.8 88 33.0
AUR62038945 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.7e-07 60.8 88 33.0
Lj2A685T11 Lonicera japonica HOM05D005862 ORTHO05D007731 8.0e-07 60.1 150 28.7
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 1.4e-06 59.3 98 31.6
Pp3c12_2390 Physcomitrium patens HOM05D000855 ORTHO05D008530 1.4e-06 59.3 99 34.3
Cc07_g18980 Coffea canephora HOM05D000162 ORTHO05D000090 5.2e-06 57.4 102 30.4
SalBow6G5562 Salvia bowleyana HOM05D001779 ORTHO05D001753 5.2e-06 57.4 140 31.4
Glyma.12G183600 Glycine max HOM05D000001 ORTHO05D000003 8.8e-06 56.6 185 25.4
Zm00001eb328630 Zea mays HOM05D000001 ORTHO05D000003 8.8e-06 56.6 160 26.9


User provided reference genes

Program Settings