Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 2.9e-79 298.5 152 100.0
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.1e-59 233.4 122 95.9
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.6e-58 229.6 122 95.1
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 6.9e-57 224.2 122 91.8
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.2e-56 223.4 121 92.6
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 2.0e-56 222.6 120 93.3
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 3.8e-55 218.4 122 90.2
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.8e-55 218.4 122 91.8
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 6.5e-55 217.6 122 91.0
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.1e-54 216.9 121 90.1
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 4.2e-54 214.9 122 87.7
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 5.5e-54 214.5 122 89.3
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.2e-53 213.4 120 91.7
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 1.6e-53 213.0 122 86.9
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 2.3e-52 209.1 122 86.1
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 2.3e-52 209.1 122 85.2
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 6.7e-52 207.6 122 84.4
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 8.8e-52 207.2 122 84.4
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.4e-51 204.9 124 82.3
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 7.4e-51 204.1 122 84.4
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 9.7e-51 203.8 122 86.9
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 1.3e-50 203.4 122 86.1
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 1.7e-50 203.0 122 83.6
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 2.2e-50 202.6 122 83.6
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.2e-50 202.6 121 83.5
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 2.8e-50 202.2 122 83.6
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 4.8e-50 201.4 122 85.2
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 6.3e-50 201.1 119 84.0
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 8.2e-50 200.7 122 84.4
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.4e-49 199.1 122 82.0
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 3.1e-49 198.7 122 82.0
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 3.1e-49 198.7 120 82.5
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 4.1e-49 198.4 120 82.5
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.1e-49 198.4 122 81.1
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.1e-49 198.4 122 81.1
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 5.3e-49 198.0 122 82.8
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 6.9e-49 197.6 121 80.2
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 6.9e-49 197.6 121 82.6
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.2e-48 196.8 121 82.6
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.5e-48 196.4 122 78.7
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.5e-48 196.4 122 82.8
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.5e-48 196.4 121 81.0
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.5e-48 196.4 121 81.0
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 2.6e-48 195.7 120 82.5
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.6e-48 195.7 125 80.8
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 5.9e-48 194.5 121 82.6
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.0e-47 193.7 115 83.5
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.0e-47 193.7 121 79.3
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 2.2e-47 192.6 121 77.7
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 2.2e-47 192.6 122 81.1
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.2e-47 192.6 122 81.1
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 2.2e-47 192.6 122 81.1
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 2.9e-47 192.2 122 77.0
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.9e-47 192.2 121 80.2
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 3.8e-47 191.8 119 79.8
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.8e-47 191.8 121 81.0
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.8e-47 191.8 121 81.0
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 3.8e-47 191.8 115 86.1
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 3.8e-47 191.8 121 81.0
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 5.0e-47 191.4 121 80.2
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 8.5e-47 190.7 125 79.2
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 8.5e-47 190.7 122 80.3
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.1e-46 190.3 122 77.0
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 1.4e-46 189.9 122 77.0
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.4e-46 189.9 122 82.0
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.9e-46 189.5 122 77.0
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.9e-46 189.5 121 78.5
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.5e-46 189.1 124 77.4
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 2.5e-46 189.1 120 81.7
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 3.2e-46 188.7 159 63.5
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 4.2e-46 188.3 120 77.5
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 5.5e-46 188.0 122 76.2
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 5.5e-46 188.0 122 76.2
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 7.2e-46 187.6 120 76.7
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 9.4e-46 187.2 120 78.3
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.2e-45 186.8 122 75.4
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.6e-45 186.4 123 77.2
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.6e-45 186.4 121 76.9
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.1e-45 186.0 132 74.2
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 2.1e-45 186.0 120 76.7
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.1e-45 186.0 123 79.7
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 2.7e-45 185.7 120 76.7
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 2.7e-45 185.7 120 76.7
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 3.6e-45 185.3 121 76.0
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 4.7e-45 184.9 122 75.4
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 4.7e-45 184.9 121 81.0
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 6.1e-45 184.5 120 76.7
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 6.1e-45 184.5 120 76.7
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 6.1e-45 184.5 120 76.7
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 6.1e-45 184.5 121 78.5
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.1e-45 184.5 120 77.5
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 7.9e-45 184.1 120 75.8
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 7.9e-45 184.1 120 75.8
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.0e-44 183.7 119 76.5
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.0e-44 183.7 119 76.5
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.4e-44 183.3 120 79.2
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.4e-44 183.3 122 73.8
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.4e-44 183.3 117 77.8
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.4e-44 183.3 124 75.8
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 1.4e-44 183.3 123 75.6
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 2.3e-44 182.6 121 78.5
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 2.3e-44 182.6 114 79.8
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 2.3e-44 182.6 120 77.5
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 3.0e-44 182.2 124 77.4
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 3.0e-44 182.2 121 74.4
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 3.9e-44 181.8 122 77.9
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 3.9e-44 181.8 122 77.9
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 8.8e-44 180.6 119 78.2
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.5e-43 179.9 129 72.1
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.5e-43 179.9 120 79.2
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.5e-43 179.9 120 79.2
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.5e-43 179.9 120 78.3
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.6e-43 179.1 118 79.7
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.4e-43 178.3 113 79.6
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 7.4e-43 177.6 117 77.8
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 7.4e-43 177.6 122 74.6
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 7.4e-43 177.6 121 75.2
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 9.7e-43 177.2 118 79.7
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.7e-42 176.4 117 78.6
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.7e-42 176.4 122 73.8
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.2e-42 176.0 113 79.6
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.8e-42 175.6 113 78.8
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.8e-42 175.6 113 78.8
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.7e-42 175.3 113 78.8
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-41 173.7 114 80.7
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-41 173.7 113 77.9
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.4e-41 173.3 112 79.5
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.4e-41 173.3 122 73.0
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.4e-41 172.6 118 78.0
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.3e-41 171.4 113 77.0
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.6e-40 169.9 112 77.7
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 7.7e-40 167.5 127 72.4
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.7e-39 166.4 119 74.8
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 3.8e-39 165.2 112 75.0
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 5.0e-39 164.9 119 71.4
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 5.0e-39 164.9 113 73.5
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 3.2e-38 162.2 114 72.8
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.2e-37 160.2 114 71.9
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.6e-37 159.8 121 72.7
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 3.6e-37 158.7 122 71.3
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 6.1e-37 157.9 115 73.9
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.4e-36 156.8 180 51.7
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.2e-36 154.8 122 69.7
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.2e-35 153.7 126 68.3
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 3.7e-34 148.7 116 69.0
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 9.1e-33 144.1 120 63.3
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 8.5e-31 137.5 119 60.5
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 4.2e-30 135.2 114 65.8
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-24 117.1 139 51.8
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 7.2e-22 107.8 114 56.1
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.2e-20 101.7 75 69.3
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.8e-20 101.3 121 52.1
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 9.2e-17 90.9 113 50.4
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.7e-16 89.4 75 66.7
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.5e-16 88.6 44 95.5
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.3e-15 87.0 56 78.6
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.9e-14 83.2 115 43.5
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.0e-11 73.2 101 48.5
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.4e-09 66.2 97 50.5
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 7.0e-09 64.7 64 57.8


User provided reference genes

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