Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37470 Trifolium pratense HOM05D003157 ORTHO05D004447 2.2e-96 355.5 171 100.0
Medtr4g104960 Medicago truncatula HOM05D003157 ORTHO05D012168 1.4e-37 160.2 162 52.5
Medtr4g104900 Medicago truncatula HOM05D003157 ORTHO05D012168 2.0e-36 156.4 165 51.5
Medtr4g104940 Medicago truncatula HOM05D003157 ORTHO05D012168 2.6e-36 156.0 170 50.0
Medtr4g104980 Medicago truncatula HOM05D003157 ORTHO05D012168 1.5e-28 130.2 141 47.5
Medtr4g104890 Medicago truncatula HOM05D003157 ORTHO05D012168 1.0e-24 117.5 143 44.8
Psat4g060880 Pisum sativum HOM05D003157 ORTHO05D004447 1.8e-24 116.7 86 61.6
Glyma.17G084700 Glycine max HOM05D003157 ORTHO05D004447 5.1e-24 115.2 89 60.7
Lalb_Chr13g0297581 Lupinus albus HOM05D003157 ORTHO05D004447 1.9e-23 113.2 86 61.6
Lj4g0014353 Lotus japonicus HOM05D003157 ORTHO05D004447 5.6e-23 111.7 86 59.3
Medtr4g104880 Medicago truncatula HOM05D003157 ORTHO05D004447 7.4e-23 111.3 86 58.1
Ca_14277_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 2.1e-22 109.8 86 58.1
Glyma.05G041600 Glycine max HOM05D003157 ORTHO05D004447 2.1e-22 109.8 89 57.3
Lalb_Chr07g0182971 Lupinus albus HOM05D003157 ORTHO05D004447 2.1e-22 109.8 86 58.1
TPR.G37494 Trifolium pratense HOM05D003157 ORTHO05D004447 2.1e-22 109.8 86 59.3
Medtr4g104990 Medicago truncatula HOM05D003157 ORTHO05D012168 1.2e-20 104.0 141 43.3
TPR.G37497 Trifolium pratense HOM05D003157 ORTHO05D012168 2.0e-20 103.2 129 40.3
VMungo1215G0567 Vigna mungo HOM05D003157 ORTHO05D004447 2.0e-20 103.2 99 47.5
Phvul.003G205000 Phaseolus vulgaris HOM05D003157 ORTHO05D004447 2.6e-20 102.8 89 53.9
Lalb_Chr12g0201891 Lupinus albus HOM05D003157 ORTHO05D004447 3.4e-20 102.4 86 53.5
Psat4g060960 Pisum sativum HOM05D003157 ORTHO05D012168 3.4e-20 102.4 98 50.0
Prupe.5G165800 Prunus persica HOM05D003157 ORTHO05D004447 5.8e-20 101.7 89 53.9
TWI14G1342 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 5.8e-20 101.7 89 55.1
Thecc.03G025700 Theobroma cacao HOM05D003157 ORTHO05D004447 7.6e-20 101.3 89 50.6
CANSAT80G2678 Cannabis sativa HOM05D003157 ORTHO05D004447 2.9e-19 99.4 86 51.2
TWI23G0818 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 2.9e-19 99.4 84 54.8
RcHm_v2.0_Chr7g0192591 Rosa chinensis HOM05D003157 ORTHO05D004447 6.5e-19 98.2 84 56.0
Potri.012G085700 Populus trichocarpa HOM05D003157 ORTHO05D004447 8.4e-19 97.8 89 50.6
Manes.06G110100 Manihot esculenta HOM05D003157 ORTHO05D004447 1.1e-18 97.4 89 50.6
ClCG01G013500 Citrullus lanatus HOM05D003157 ORTHO05D004447 1.4e-18 97.1 86 50.0
QL10p006899 Quercus lobata HOM05D003157 ORTHO05D004447 2.5e-18 96.3 86 51.2
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 3.2e-18 95.9 90 50.0
FvH4_5g06270 Fragaria vesca HOM05D003157 ORTHO05D004447 5.5e-18 95.1 84 51.2
Gohir.A11G040300 Gossypium hirsutum HOM05D003157 ORTHO05D004447 5.5e-18 95.1 89 47.2
Gohir.D11G043500 Gossypium hirsutum HOM05D003157 ORTHO05D004447 5.5e-18 95.1 89 47.2
Gorai.007G046900 Gossypium raimondii HOM05D003157 ORTHO05D004447 5.5e-18 95.1 89 47.2
ClCG03G002990 Citrullus lanatus HOM05D003157 ORTHO05D004447 7.1e-18 94.7 82 47.6
MELO3C002297.2 Cucumis melo HOM05D003157 ORTHO05D004447 9.3e-18 94.4 86 47.7
Potri.015G084000 Populus trichocarpa HOM05D003157 ORTHO05D004447 9.3e-18 94.4 89 48.3
PGR044G1972 Punica granatum HOM05D003157 ORTHO05D004447 9.3e-18 94.4 89 49.4
Sabra12G0061600 Salix brachista HOM05D003157 ORTHO05D004447 9.3e-18 94.4 89 49.4
CsaV3_1G008830 Cucumis sativus L. HOM05D003157 ORTHO05D004447 1.2e-17 94.0 86 46.5
Ciclev10024152m.g Citrus clementina HOM05D003157 ORTHO05D004447 2.1e-17 93.2 86 52.3
FAN04G1965 Fragaria x ananassa HOM05D003157 ORTHO05D004447 2.1e-17 93.2 84 51.2
Sed0005003 Sechium edule HOM05D003157 ORTHO05D004447 2.1e-17 93.2 81 49.4
BolC1t01929H Brassica oleracea HOM05D003157 ORTHO05D004447 2.7e-17 92.8 89 46.1
THA.LOC104809775 Tarenaya hassleriana HOM05D003157 ORTHO05D004447 4.6e-17 92.0 82 52.4
BcaC09g50840 Brassica carinata HOM05D003157 ORTHO05D004447 6.0e-17 91.7 89 46.1
C01p20020 Brassica napus HOM05D003157 ORTHO05D004447 6.0e-17 91.7 89 46.1
Manes.14G060700 Manihot esculenta HOM05D003157 ORTHO05D004447 6.0e-17 91.7 89 48.3
MD06G1165900 Malus domestica HOM05D003157 ORTHO05D004447 1.0e-16 90.9 89 48.3
arahy.Tifrunner.gnm1.ann1.UDW2C6 Arachis hypogaea HOM05D003157 ORTHO05D004447 1.3e-16 90.5 84 50.0
CARHR232070 Cardamine hirsuta HOM05D003157 ORTHO05D004447 1.3e-16 90.5 88 44.3
Eucgr.K02800 Eucalyptus grandis HOM05D003157 ORTHO05D004447 1.8e-16 90.1 90 45.6
Gohir.A03G056900 Gossypium hirsutum HOM05D003157 ORTHO05D004447 1.8e-16 90.1 89 46.1
Gohir.D03G106700 Gossypium hirsutum HOM05D003157 ORTHO05D004447 1.8e-16 90.1 89 46.1
Gorai.003G115800 Gossypium raimondii HOM05D003157 ORTHO05D004447 1.8e-16 90.1 89 46.1
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 2.3e-16 89.7 87 48.3
FAN13G0746 Fragaria x ananassa HOM05D003157 ORTHO05D004447 2.3e-16 89.7 81 50.6
arahy.Tifrunner.gnm1.ann1.RZMV9E Arachis hypogaea HOM05D003157 ORTHO05D004447 3.0e-16 89.4 84 50.0
Thhalv10024557m.g Eutrema salsugineum HOM05D003157 ORTHO05D004447 3.0e-16 89.4 88 45.5
MD14G1171800 Malus domestica HOM05D003157 ORTHO05D004447 3.0e-16 89.4 84 50.0
Sabra15G0107200 Salix brachista HOM05D003157 ORTHO05D004447 3.9e-16 89.0 83 47.0
A08p21390 Brassica napus HOM05D003157 ORTHO05D004447 5.1e-16 88.6 87 48.3
BraA08t34089Z Brassica rapa HOM05D003157 ORTHO05D004447 5.1e-16 88.6 87 48.3
BraA01t01537Z Brassica rapa HOM05D003157 ORTHO05D004447 6.7e-16 88.2 88 45.5
Cpa.g.sc159.27 Carica papaya HOM05D003157 ORTHO05D004447 6.7e-16 88.2 88 44.3
Aa31LG4G9790 Aethionema arabicum HOM05D003157 ORTHO05D004447 8.7e-16 87.8 84 47.6
GSVIVG01007647001 Vitis vinifera HOM05D003157 ORTHO05D004447 8.7e-16 87.8 89 43.8
A01p16030 Brassica napus HOM05D003157 ORTHO05D004447 1.1e-15 87.4 88 45.5
CiPaw.11G019800 Carya illinoinensis HOM05D003157 ORTHO05D004447 1.5e-15 87.0 81 46.9
Haze_07584 Corylus avellana HOM05D003157 ORTHO05D004447 1.5e-15 87.0 82 48.8
FAN08G1011 Fragaria x ananassa HOM05D003157 ORTHO05D004447 1.5e-15 87.0 80 51.2
Medtr4g104950 Medicago truncatula HOM05D003157 ORTHO05D012168 2.5e-15 86.3 72 55.6
AT4G24690 Arabidopsis thaliana HOM05D003157 ORTHO05D004447 3.3e-15 85.9 81 46.9
Hund02785 Selenicereus undatus HOM05D003157 ORTHO05D004447 4.3e-15 85.5 87 49.4
BolC7t45866H Brassica oleracea HOM05D003157 ORTHO05D004447 7.4e-15 84.7 83 47.0
BolC8t48585H Brassica oleracea HOM05D003157 ORTHO05D004447 7.4e-15 84.7 85 48.2
Cfa019214 Carpinus fangiana HOM05D003157 ORTHO05D004447 7.4e-15 84.7 82 46.3
BcaC07g38161 Brassica carinata HOM05D003157 ORTHO05D004447 1.3e-14 84.0 79 49.4
Sp7g22680 Schrenkiella parvula HOM05D003157 ORTHO05D004447 1.3e-14 84.0 88 43.2
CiPaw.11G020300 Carya illinoinensis HOM05D003157 ORTHO05D012168 1.6e-14 83.6 81 46.9
AUR62028729 Chenopodium quinoa HOM05D003157 ORTHO05D004447 1.6e-14 83.6 86 45.3
Dinv20600 Davidia involucrata HOM05D003157 ORTHO05D004447 2.1e-14 83.2 89 46.1
PSO754G0123 Papaver somniferum HOM05D003157 ORTHO05D004447 2.8e-14 82.8 86 45.3
Rhsim12G0167900 Rhododendron simsii HOM05D003157 ORTHO05D004447 2.8e-14 82.8 89 44.9
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 3.7e-14 82.4 87 42.5
TAR629G0508 Trochodendron aralioides HOM05D003157 ORTHO05D004447 3.7e-14 82.4 89 43.8
A03p55470 Brassica napus HOM05D003157 ORTHO05D004447 4.8e-14 82.0 87 46.0
BraA03t14620Z Brassica rapa HOM05D003157 ORTHO05D004447 4.8e-14 82.0 87 46.0
CSS0041144 Camellia sinensis var. sinensis HOM05D003157 ORTHO05D004447 6.2e-14 81.6 89 42.7
PSO111G0086 Papaver somniferum HOM05D003157 ORTHO05D004447 6.2e-14 81.6 86 45.3
AUR62008147 Chenopodium quinoa HOM05D003157 ORTHO05D004447 8.2e-14 81.3 87 43.7
AL7G28510 Arabidopsis lyrata HOM05D003157 ORTHO05D004447 1.1e-13 80.9 88 44.3
ECA232G3241 Erigeron canadensis HOM05D003157 ORTHO05D004447 1.1e-13 80.9 110 38.2
vmacro16645 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 1.1e-13 80.9 89 42.7
Carub.0007s1637 Capsella rubella HOM05D003157 ORTHO05D004447 1.4e-13 80.5 81 45.7
Lsat_1_v5_gn_4_77240 Lactuca sativa HOM05D003157 ORTHO05D004447 1.8e-13 80.1 84 48.8
Oeu040857.2 Olea europaea HOM05D003157 ORTHO05D004447 1.8e-13 80.1 87 42.5
MSTRG.11494 Avicennia marina HOM05D003157 ORTHO05D004447 2.4e-13 79.7 84 47.6
BcaB03g12442 Brassica carinata HOM05D003157 ORTHO05D004447 2.4e-13 79.7 78 48.7
Ca_03503_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 3.1e-13 79.3 55 67.3
SGA_v2.0_scaffold114G31812 Striga asiatica HOM05D003157 ORTHO05D004447 4.1e-13 79.0 87 46.0
Sed0026079 Sechium edule HOM05D003157 ORTHO05D004447 6.9e-13 78.2 84 42.9
Actinidia08960 Actinidia chinensis HOM05D003157 ORTHO05D004447 9.0e-13 77.8 89 39.3
Rhsim08G0177500 Rhododendron simsii HOM05D003157 ORTHO05D004447 9.0e-13 77.8 86 41.9
SalBow6G1229 Salvia bowleyana HOM05D003157 ORTHO05D004447 9.0e-13 77.8 87 42.5
MSTRG.9691 Avicennia marina HOM05D003157 ORTHO05D004447 2.6e-12 76.3 87 41.4
Prupe.5G165900 Prunus persica HOM05D003157 ORTHO05D012168 2.6e-12 76.3 82 40.2
EL10Ac5g10658 Beta vulgaris HOM05D003157 ORTHO05D004447 4.5e-12 75.5 86 43.0
CDE02G1794 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 4.5e-12 75.5 89 43.8
Aqoxy3G01217 Aquilegia oxysepala HOM05D003157 ORTHO05D004447 7.6e-12 74.7 84 42.9
Solyc06g071770.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 7.6e-12 74.7 89 39.3
vmacro19300 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 7.6e-12 74.7 80 41.2
Migut.D01995 Erythranthe guttata HOM05D003157 ORTHO05D004447 1.0e-11 74.3 88 39.8
Nitab4.5_0008713g0020 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.3e-11 73.9 89 40.4
TAR371G0612 Trochodendron aralioides HOM05D003157 ORTHO05D004447 1.3e-11 73.9 88 38.6
CDE04G2303 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 1.7e-11 73.6 89 41.6
Nitab4.5_0001793g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.7e-11 73.6 89 42.7
Nitab4.5_0010452g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.7e-11 73.6 89 42.7
RcHm_v2.0_Chr7g0192771 Rosa chinensis HOM05D003157 ORTHO05D012168 1.7e-11 73.6 82 41.5
Sopen06g028060 Solanum pennellii HOM05D003157 ORTHO05D004447 1.7e-11 73.6 89 39.3
SGA_v2.0_scaffold7G04161 Striga asiatica HOM05D003157 ORTHO05D004447 1.7e-11 73.6 87 43.7
Actinidia08033 Actinidia chinensis HOM05D000048 ORTHO05D004447 2.2e-11 73.2 82 40.2
Actinidia24597 Actinidia chinensis HOM05D003157 ORTHO05D004447 2.2e-11 73.2 82 40.2
COL.COLO4_24272 Corchorus olitorius HOM05D003157 ORTHO05D004447 2.9e-11 72.8 89 40.4
PGSC0003DMG400018122 Solanum tuberosum HOM05D003157 ORTHO05D004447 3.8e-11 72.4 84 42.9
CAN.G338.32 Capsicum annuum HOM05D003157 ORTHO05D004447 5.0e-11 72.0 89 40.4
Cc04_g11550 Coffea canephora HOM05D003157 ORTHO05D004447 5.0e-11 72.0 86 43.0
SHI17273 Sapria himalayana HOM05D003157 ORTHO05D004447 5.0e-11 72.0 83 38.6
HanXRQChr10g0296081 Helianthus annuus HOM05D003157 ORTHO05D004447 6.5e-11 71.6 86 43.0
PGSC0003DMG400027073 Solanum tuberosum HOM05D003157 ORTHO05D004447 6.5e-11 71.6 86 37.2
Lsat_1_v5_gn_8_1421 Lactuca sativa HOM05D003157 ORTHO05D012168 8.4e-11 71.2 73 46.6
Nitab4.5_0000003g0820 Nicotiana tabacum HOM05D003157 ORTHO05D004447 8.4e-11 71.2 89 40.4
Sc12g0005010 Simmondsia chinensis HOM05D003157 ORTHO05D004447 8.4e-11 71.2 90 36.7
Aqoxy3G03011 Aquilegia oxysepala HOM05D003157 ORTHO05D012168 1.4e-10 70.5 85 41.2
Lsat_1_v5_gn_1_27780 Lactuca sativa HOM05D003157 ORTHO05D004447 2.5e-10 69.7 100 39.0
Peaxi162Scf00089g01334 Petunia axillaris HOM05D003157 ORTHO05D004447 3.2e-10 69.3 87 39.1
CAN.G993.20 Capsicum annuum HOM05D003157 ORTHO05D004447 4.2e-10 68.9 89 37.1
SEGI_11452 Sequoiadendron giganteum HOM05D003157 ORTHO05D004447 4.2e-10 68.9 82 32.9
Solyc03g112230.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 4.2e-10 68.9 84 41.7
Sopen03g031330 Solanum pennellii HOM05D003157 ORTHO05D004447 4.2e-10 68.9 84 41.7
SEGI_31497 Sequoiadendron giganteum HOM05D003157 ORTHO05D012168 5.5e-10 68.6 84 33.3
DCAR_016024 Daucus carota HOM05D003157 ORTHO05D004447 9.3e-10 67.8 82 37.8
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 9.3e-10 67.8 81 45.7
ECA232G3078 Erigeron canadensis HOM05D000048 ORTHO05D002613 2.1e-09 66.6 85 41.2
HanXRQChr16g0504701 Helianthus annuus HOM05D003157 ORTHO05D004447 2.7e-09 66.2 88 39.8
Os02g0593700 Oryza sativa ssp. japonica HOM05D003157 ORTHO05D004447 2.7e-09 66.2 87 40.2
FAN08G3352 Fragaria x ananassa HOM05D003157 ORTHO05D012168 3.5e-09 65.9 82 37.8
Os04g0476800 Oryza sativa ssp. japonica HOM05D003157 ORTHO05D004447 3.5e-09 65.9 84 39.3
Lj5A130T68 Lonicera japonica HOM05D003157 ORTHO05D004447 6.1e-09 65.1 80 38.8
ATR0824G119 Amborella trichopoda HOM05D003157 ORTHO05D004447 7.9e-09 64.7 87 35.6
DCAR_026172 Daucus carota HOM05D003157 ORTHO05D004447 7.9e-09 64.7 77 35.1
FAN18G2672 Fragaria x ananassa HOM05D003157 ORTHO05D004447 7.9e-09 64.7 55 54.5
Oeu020884.3 Olea europaea HOM05D003157 ORTHO05D004447 7.9e-09 64.7 84 39.3
unitig_37.g12746 Utricularia gibba HOM05D003157 ORTHO05D004447 7.9e-09 64.7 87 36.8
FvH4_5g06081 Fragaria vesca HOM05D003157 ORTHO05D012168 1.3e-08 63.9 82 36.6
Ah.11g051160 Amaranthus hybridus HOM05D003157 ORTHO05D004447 1.8e-08 63.5 88 36.4
FAN13G2541 Fragaria x ananassa HOM05D003157 ORTHO05D012168 2.3e-08 63.2 97 35.1
Nn3g16701 Nelumbo nucifera HOM05D003157 ORTHO05D004447 2.3e-08 63.2 88 36.4
FAN18G2478 Fragaria x ananassa HOM05D003157 ORTHO05D012168 3.0e-08 62.8 82 36.6
Peaxi162Scf00763g00430 Petunia axillaris HOM05D003157 ORTHO05D004447 3.0e-08 62.8 78 37.2
Zm00001eb245950 Zea mays HOM05D003157 ORTHO05D004447 3.9e-08 62.4 84 38.1
ECA232G1718 Erigeron canadensis HOM05D003157 ORTHO05D012168 6.7e-08 61.6 76 38.2
Zm00001eb079700 Zea mays HOM05D003157 ORTHO05D004447 8.7e-08 61.2 88 35.2
Migut.O00156 Erythranthe guttata HOM05D003157 ORTHO05D004447 1.5e-07 60.5 84 36.9
FAN04G1049 Fragaria x ananassa HOM05D003157 ORTHO05D012168 1.5e-07 60.5 74 37.8
HPP92_006279 Vanilla planifolia HOM05D003157 ORTHO05D004447 7.4e-07 58.2 84 42.9
DCAR_021588 Daucus carota HOM05D003157 ORTHO05D004447 1.3e-06 57.4 58 46.6
HPP92_024706 Vanilla planifolia HOM05D003157 ORTHO05D004447 1.3e-06 57.4 83 39.8
MD06G1166000 Malus domestica HOM05D003157 ORTHO05D012168 2.8e-06 56.2 74 36.5
Lj9A442T64 Lonicera japonica HOM05D003157 ORTHO05D004447 3.7e-06 55.8 58 46.6
Migut.O00157 Erythranthe guttata HOM05D003157 ORTHO05D004447 6.3e-06 55.1 85 31.8


User provided reference genes

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