Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1433.3 721 100.0
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1261.9 674 93.9
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1250.0 661 94.3
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1204.1 670 89.9
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1198.0 670 89.1
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1193.7 668 89.1
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1192.9 661 90.9
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1192.2 665 89.3
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1188.7 654 90.4
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1187.2 660 89.8
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1178.7 696 85.5
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1172.9 659 87.9
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 676 85.2
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1159.1 654 88.1
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1159.1 667 86.1
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1156.4 673 86.0
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1154.0 673 85.9
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1151.3 648 87.5
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1149.0 674 85.3
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1149.0 655 87.2
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1147.9 655 86.6
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1147.9 651 86.5
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1147.5 641 88.5
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1146.3 653 87.4
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1140.9 645 87.0
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1139.8 645 87.1
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1139.4 679 83.1
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1139.0 662 85.5
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1137.5 652 86.2
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1135.6 654 85.8
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1135.2 653 86.4
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1133.2 671 83.9
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1133.2 658 85.7
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1130.9 671 83.9
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1130.5 650 85.5
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1129.8 625 89.0
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1128.6 649 85.5
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1124.8 636 87.4
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1123.2 647 85.5
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1122.1 625 88.0
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1119.4 647 85.2
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1116.3 645 84.5
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1115.1 630 87.3
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1113.6 689 81.7
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1111.7 634 86.3
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1111.7 653 85.3
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1111.3 623 88.9
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1107.4 633 86.1
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1107.0 687 81.5
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1106.7 660 85.0
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1105.1 687 81.4
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1104.0 648 83.8
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1102.4 649 84.0
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1101.3 702 79.5
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1101.3 702 79.5
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1100.9 640 85.0
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1099.0 646 83.9
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1097.8 643 84.4
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1096.6 646 82.8
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1096.3 643 84.3
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1095.5 656 82.3
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1094.7 638 84.2
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1094.0 646 83.7
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1094.0 646 83.7
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 638 84.2
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1092.0 662 82.3
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1092.0 721 77.4
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1089.3 674 80.6
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1088.9 640 83.8
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1087.8 655 81.5
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1087.4 653 84.1
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1079.3 662 81.7
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1075.5 648 82.1
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 4.9e-312 1073.9 633 85.3
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 4.4e-311 1070.8 644 82.3
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 4.4e-311 1070.8 671 78.2
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 1.3e-307 1059.3 652 82.4
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.2e-305 1052.7 843 66.7
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 6.2e-305 1050.4 722 74.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 3.7e-302 1041.2 683 77.9
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.6e-297 1025.8 682 77.4
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 5.4e-293 1010.7 636 78.5
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 2.5e-290 1001.9 714 72.7
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 4.3e-290 1001.1 591 84.9
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 6.8e-288 993.8 625 76.6
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 4.3e-282 974.5 559 85.3
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 4.4e-279 964.5 646 73.7
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 4.9e-270 934.5 521 88.3
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 6.4e-270 934.1 493 93.1
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 2.1e-265 919.1 602 74.1
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 2.8e-265 918.7 647 72.3
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 2.0e-263 912.5 528 85.0
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 3.4e-263 911.8 485 90.9
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.7e-262 909.4 530 84.9
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 4.9e-262 907.9 486 90.7
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 7.9e-260 900.6 533 82.2
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.3e-259 899.8 624 70.7
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 5.3e-256 887.9 519 85.0
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 2.8e-249 865.5 606 72.8
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.0e-243 847.0 658 64.6
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 7.9e-236 820.8 429 91.6
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 7.7e-231 804.3 428 91.6
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 5.2e-227 791.6 614 65.1
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 4.7e-212 741.9 498 75.9
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 1.9e-192 676.8 387 83.7
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 1.1e-189 667.5 410 82.7
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 2.1e-183 646.7 407 78.4
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 6.6e-182 641.7 352 87.8
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 3.9e-174 615.9 401 76.8
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 9.6e-149 531.6 284 90.1
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 3.2e-144 516.5 445 64.0
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 2.2e-132 477.2 599 43.9
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.9e-128 464.2 647 40.3
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 2.2e-113 414.1 670 38.8
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 5.7e-109 399.4 370 60.0
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 1.1e-107 395.2 358 58.9
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.6e-103 381.3 484 44.6
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 1.5e-93 348.2 318 58.5
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 4.1e-91 340.1 227 78.4
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.0e-81 308.9 172 89.0
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 3.9e-73 280.4 161 83.9
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.9e-57 227.3 162 65.4
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.8e-55 221.1 177 65.0
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 9.3e-51 206.1 111 91.9
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 4.0e-46 190.7 114 83.3
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 2.7e-42 177.9 184 50.5
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 4.3e-40 170.6 263 42.2
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 4.0e-38 164.1 105 75.2
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 5.8e-37 160.2 171 53.8
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 6.4e-36 156.8 112 69.6
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 5.5e-35 153.7 113 69.0
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 6.0e-34 150.2 95 76.8
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.1e-32 146.0 74 93.2
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 5.6e-32 143.7 83 85.5
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 1.4e-30 139.0 139 57.6
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 3.1e-30 137.9 71 81.7
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 4.6e-26 124.0 93 71.0
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 2.8e-23 114.8 94 68.1
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.9e-22 110.2 95 63.2
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 3.0e-17 94.7 60 71.7
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 4.8e-15 87.4 47 76.6
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 6.9e-14 83.6 77 58.4
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 6.9e-14 83.6 43 90.7
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 1.2e-13 82.8 48 75.0


User provided reference genes

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