Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 2.4e-232 808.5 426 100.0
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 6.1e-143 511.5 398 68.1
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 3.9e-142 508.8 398 69.6
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 4.5e-130 468.8 398 65.6
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 1.3e-129 467.2 403 64.3
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 3.8e-129 465.7 390 64.9
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 5.2e-118 428.7 416 60.1
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 3.5e-114 416.0 391 61.1
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 1.6e-111 407.1 460 53.3
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 4.1e-107 392.5 390 63.1
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 3.0e-105 386.3 439 54.7
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 6.6e-105 385.2 209 89.0
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.5e-101 374.0 414 56.3
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 7.5e-101 371.7 406 60.6
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 1.6e-98 364.0 412 55.1
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 3.5e-98 362.8 416 55.3
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 1.0e-97 361.3 412 55.1
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 2.3e-97 360.1 401 58.9
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 8.6e-97 358.2 410 54.6
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 4.3e-96 355.9 414 54.1
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 4.3e-96 355.9 411 54.3
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 5.6e-96 355.5 398 56.3
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 1.1e-94 351.3 415 53.7
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 5.2e-94 349.0 411 53.5
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 6.8e-94 348.6 389 54.0
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 8.9e-94 348.2 414 57.0
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.4e-93 345.9 414 53.4
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 4.4e-93 345.9 411 53.8
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 5.8e-93 345.5 403 57.6
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 5.4e-91 339.0 391 55.5
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 1.2e-90 337.8 390 54.9
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 1.2e-90 337.8 410 54.1
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.6e-90 337.4 426 51.6
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 3.5e-90 336.3 421 51.3
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 6.0e-90 335.5 411 51.8
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 1.0e-89 334.7 413 54.2
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 1.3e-89 334.3 410 52.9
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-88 330.9 412 53.9
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 2.5e-88 330.1 418 51.4
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.1e-87 327.0 421 51.5
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 6.2e-87 325.5 384 56.2
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 4.0e-86 322.8 392 52.6
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 5.2e-86 322.4 412 50.7
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 8.9e-86 321.6 418 53.6
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.4e-85 319.3 415 51.3
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.8e-85 318.9 410 51.2
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 7.6e-85 318.5 386 56.5
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 2.2e-84 317.0 451 47.9
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 2.4e-83 313.5 422 47.4
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 4.2e-83 312.8 411 50.6
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 4.2e-83 312.8 408 52.9
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 9.2e-83 311.6 411 50.4
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 3.5e-82 309.7 410 50.0
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 7.8e-82 308.5 417 49.6
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 2.3e-81 307.0 421 48.2
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 3.6e-79 299.7 430 50.0
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 4.7e-79 299.3 412 52.9
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 1.8e-78 297.4 422 48.1
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 5.3e-78 295.8 412 48.3
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 1.3e-76 291.2 402 53.2
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 3.8e-76 289.7 388 49.2
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 2.4e-75 287.0 471 46.3
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 2.7e-74 283.5 391 52.9
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.0e-73 281.6 394 48.5
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.1e-72 278.1 364 52.2
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 5.6e-72 275.8 422 50.2
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.6e-71 274.2 423 51.8
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 2.8e-71 273.5 412 47.6
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 2.8e-71 273.5 406 47.5
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 3.6e-71 273.1 412 47.3
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 3.1e-70 270.0 413 47.5
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 2.0e-69 267.3 418 42.3
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 9.9e-69 265.0 421 46.6
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 8.4e-68 261.9 408 45.3
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 8.4e-68 261.9 431 45.5
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.4e-67 261.2 423 49.4
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 8.7e-65 251.9 406 49.0
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 3.3e-64 250.0 422 49.1
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 5.6e-64 249.2 404 44.1
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.1e-63 247.3 391 49.1
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 4.8e-63 246.1 421 47.0
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 3.2e-59 233.4 554 37.5
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 3.2e-59 233.4 423 42.6
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 7.1e-59 232.3 418 48.3
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 9.3e-59 231.9 419 48.2
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 1.2e-58 231.5 419 42.7
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 3.9e-57 226.5 218 60.1
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 4.8e-55 219.5 428 41.4
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 2.9e-52 210.3 406 44.6
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 1.6e-50 204.5 213 56.8
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 4.6e-50 203.0 408 40.2
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 7.9e-50 202.2 389 43.4
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.0e-49 201.8 215 56.7
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 1.8e-49 201.1 215 59.5
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 3.0e-49 200.3 386 44.8
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 3.0e-49 200.3 333 45.3
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 3.9e-49 199.9 214 57.0
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 3.9e-49 199.9 213 60.6
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 5.1e-49 199.5 214 57.0
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 5.1e-49 199.5 220 56.4
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.3e-48 196.8 189 57.7
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 3.3e-48 196.8 389 46.8
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 5.7e-48 196.1 215 56.3
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 7.4e-48 195.7 384 44.3
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.3e-47 194.9 384 44.5
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 3.7e-47 193.4 213 59.6
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 3.7e-47 193.4 213 59.6
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 4.8e-47 193.0 215 56.7
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 1.1e-46 191.8 215 56.3
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 5.3e-46 189.5 215 55.8
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 6.9e-46 189.1 387 45.5
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 5.5e-43 179.5 385 40.3
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 6.1e-42 176.0 356 39.3
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.8e-33 147.9 134 56.0
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.4e-32 142.5 165 51.5
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.7e-31 141.4 133 60.2
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 1.8e-30 137.9 108 62.0
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.4e-27 125.6 158 45.6
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.7e-26 124.0 116 50.9
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 3.6e-26 123.6 258 42.6
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 8.0e-26 122.5 192 44.8
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 2.3e-25 120.9 135 51.1
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 1.7e-23 114.8 324 38.6
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 2.8e-23 114.0 151 45.0
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 2.8e-23 114.0 183 43.2
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 1.4e-22 111.7 132 46.2
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.1e-22 109.0 138 48.6
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.0e-21 107.8 163 46.6
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 5.9e-21 106.3 172 39.5
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 5.9e-21 106.3 158 50.6
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 7.7e-21 105.9 103 63.1
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.3e-20 105.1 105 47.6
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-20 105.1 138 48.6
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.2e-20 104.4 138 47.1
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.8e-20 103.6 355 33.0
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 1.9e-19 101.3 239 33.9
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 3.6e-18 97.1 114 46.5
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 1.8e-17 94.7 143 42.7
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.8e-17 94.7 143 42.7
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 3.0e-17 94.0 142 42.3
arahy.Tifrunner.gnm1.ann1.JYS69T Arachis hypogaea HOM05D003406 ORTHO05D004026 6.8e-17 92.8 62 74.2
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.2e-16 92.0 57 70.2
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.2e-16 92.0 122 53.3
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 9.8e-16 89.0 110 45.5
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-15 88.2 134 41.8
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 4.8e-15 86.7 101 40.6
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-14 84.7 135 40.0
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-14 84.7 137 38.7
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 7.0e-14 82.8 136 36.8
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 9.1e-14 82.4 137 38.0
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 9.1e-14 82.4 137 38.0
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 3.5e-13 80.5 204 38.7
Aqoxy2G01592 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.0e-12 79.0 121 45.5
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.7e-12 78.2 56 58.9
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 4.7e-10 70.1 75 42.7
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.9e-07 60.1 265 34.3
PSO170G3342 Papaver somniferum HOM05D002729 ORTHO05D305508 3.1e-06 57.4 92 43.5
PSO063G4288 Papaver somniferum HOM05D002729 ORTHO05D305335 5.4e-06 56.6 92 43.5


User provided reference genes

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