Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 5.4e-115 417.9 253 100.0
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.5e-85 320.1 156 96.2
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 6.7e-65 251.5 173 72.3
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 4.1e-62 242.3 173 69.9
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 3.5e-61 239.2 248 65.3
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 5.0e-60 235.3 173 67.1
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-57 226.1 179 63.7
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 4.0e-57 225.7 179 59.2
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 5.2e-57 225.3 154 71.4
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 1.6e-50 203.8 183 56.8
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.8e-49 200.3 206 53.9
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 1.2e-48 197.6 179 59.2
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 1.7e-47 193.7 179 58.1
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 6.3e-47 191.8 175 57.1
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 8.3e-47 191.4 176 52.8
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.3e-44 184.1 173 56.1
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 1.9e-43 180.3 179 54.7
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 4.3e-43 179.1 183 53.6
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 4.3e-43 179.1 183 53.6
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.2e-42 177.6 116 71.6
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 1.0e-41 174.5 99 76.8
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.0e-41 172.6 154 59.1
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-40 171.0 155 58.1
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.5e-40 170.6 156 55.8
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-40 170.6 155 58.1
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.4e-40 169.1 166 54.2
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 2.9e-39 166.4 170 44.1
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.9e-39 165.6 167 53.3
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 4.1e-38 162.5 93 83.9
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 7.0e-38 161.8 78 96.2
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 7.0e-38 161.8 78 96.2
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 3.5e-37 159.5 78 93.6
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.6e-37 159.1 161 52.8
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 7.8e-37 158.3 107 68.2
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.8e-37 158.3 168 53.0
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 7.8e-37 158.3 78 93.6
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 7.8e-37 158.3 78 93.6
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 7.8e-37 158.3 78 93.6
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 7.8e-37 158.3 78 93.6
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.3e-36 157.5 104 74.0
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 2.5e-35 153.3 78 91.0
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.3e-35 152.9 177 51.4
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 5.6e-35 152.1 78 89.7
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 5.6e-35 152.1 78 89.7
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 5.6e-35 152.1 78 89.7
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 7.3e-35 151.8 78 89.7
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 7.3e-35 151.8 78 89.7
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 7.3e-35 151.8 78 89.7
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 7.3e-35 151.8 78 89.7
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 7.3e-35 151.8 78 89.7
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 9.5e-35 151.4 78 88.5
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 9.5e-35 151.4 77 90.9
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 9.5e-35 151.4 78 89.7
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.2e-34 151.0 78 89.7
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.2e-34 151.0 78 89.7
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.2e-34 151.0 78 89.7
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 1.6e-34 150.6 78 88.5
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 1.6e-34 150.6 78 89.7
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.6e-34 150.6 78 88.5
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.6e-34 150.6 78 88.5
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 2.1e-34 150.2 78 88.5
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 2.1e-34 150.2 78 88.5
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 2.1e-34 150.2 78 88.5
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 2.1e-34 150.2 78 88.5
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 2.8e-34 149.8 157 50.3
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 3.6e-34 149.4 78 88.5
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 3.6e-34 149.4 78 88.5
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 3.6e-34 149.4 78 88.5
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 6.2e-34 148.7 78 88.5
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 6.2e-34 148.7 78 87.2
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 1.1e-33 147.9 78 87.2
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 1.1e-33 147.9 78 87.2
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.1e-33 147.9 78 87.2
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 1.1e-33 147.9 78 87.2
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 1.1e-33 147.9 77 88.3
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 1.1e-33 147.9 79 87.3
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.8e-33 147.1 78 87.2
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 1.8e-33 147.1 79 87.3
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 1.8e-33 147.1 78 85.9
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.8e-33 147.1 78 87.2
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.3e-33 146.7 78 87.2
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 2.3e-33 146.7 78 87.2
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 2.3e-33 146.7 78 85.9
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 2.3e-33 146.7 79 83.5
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 3.1e-33 146.4 74 91.9
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 4.0e-33 146.0 77 85.7
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 4.0e-33 146.0 77 85.7
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.0e-33 146.0 75 89.3
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 4.0e-33 146.0 78 87.2
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 4.0e-33 146.0 78 85.9
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 5.2e-33 145.6 79 86.1
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 5.2e-33 145.6 79 86.1
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 5.2e-33 145.6 79 86.1
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 8.9e-33 144.8 77 85.7
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 8.9e-33 144.8 77 85.7
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-32 144.4 167 49.7
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.5e-32 144.1 78 85.9
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.5e-32 144.1 78 84.6
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.5e-32 144.1 77 84.4
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.5e-32 144.1 77 84.4
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 2.0e-32 143.7 77 84.4
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 2.0e-32 143.7 77 84.4
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 2.6e-32 143.3 78 84.6
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.6e-32 143.3 77 84.4
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.6e-32 143.3 77 84.4
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.4e-32 142.9 78 83.3
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 4.4e-32 142.5 78 84.6
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 4.4e-32 142.5 78 84.6
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 4.4e-32 142.5 78 84.6
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 4.4e-32 142.5 78 84.6
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 4.4e-32 142.5 78 84.6
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 4.4e-32 142.5 78 84.6
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 4.4e-32 142.5 79 81.0
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 7.5e-32 141.7 77 84.4
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 9.8e-32 141.4 151 51.0
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 9.8e-32 141.4 78 82.1
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 9.8e-32 141.4 78 82.1
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 2.2e-31 140.2 79 81.0
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 2.2e-31 140.2 73 86.3
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 3.7e-31 139.4 146 47.3
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 8.3e-31 138.3 77 80.5
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 1.9e-30 137.1 79 79.7
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 5.4e-30 135.6 77 83.1
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.4e-30 135.6 77 83.1
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 5.4e-30 135.6 78 80.8
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 5.4e-30 135.6 78 82.1
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 4.6e-29 132.5 78 76.9
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 1.3e-28 131.0 178 40.4
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-28 131.0 105 62.9
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 9.5e-27 124.8 81 72.8
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 2.1e-26 123.6 78 73.1
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 2.8e-26 123.2 78 71.8
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 1.8e-25 120.6 100 55.0
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 4.0e-25 119.4 80 68.8
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 2.6e-24 116.7 72 76.4
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.4e-24 115.9 86 67.4
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-24 115.2 158 45.6
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.9e-24 114.8 90 65.6
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 2.4e-22 110.2 124 50.0
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 9.2e-22 108.2 49 95.9
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 6.6e-20 102.1 60 80.0
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-20 101.7 155 41.3
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-20 101.7 117 45.3
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-18 97.8 57 70.2
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 4.7e-18 95.9 132 45.5
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.2e-16 91.3 106 49.1
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.2e-16 91.3 106 49.1
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-16 90.1 106 47.2
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 9.9e-16 88.2 71 64.8
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.8e-15 86.3 106 47.2
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 6.4e-15 85.5 64 64.1
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 6.0e-13 79.0 43 81.4
SEGI_32752 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.2e-10 71.2 36 83.3
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 1.6e-10 70.9 72 47.2
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 4.4e-08 62.8 38 71.1
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 1.3e-07 61.2 37 75.7
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 1.3e-07 61.2 37 75.7
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 1.7e-07 60.8 101 29.7
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 8.4e-07 58.5 24 100.0
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 3.2e-06 56.6 23 100.0
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 7.1e-06 55.5 118 31.4
Thhalv10003834m.g Eutrema salsugineum HOM05D002634 ORTHO05D003100 7.1e-06 55.5 110 31.8
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.1e-06 55.5 39 61.5


User provided reference genes

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