Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36388 Trifolium pratense HOM05D003169 ORTHO05D036887 1.4e-77 292.7 138 100.0
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 3.6e-52 208.4 140 73.6
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 1.8e-51 206.1 140 72.9
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 5.2e-51 204.5 123 78.0
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 1.3e-49 199.9 142 69.0
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 6.5e-46 187.6 140 67.1
Ca_30144_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 4.2e-45 184.9 140 66.4
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 7.0e-40 167.5 121 70.2
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 3.5e-39 165.2 121 69.4
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 4.5e-39 164.9 140 59.3
TPR.G3623 Trifolium pratense HOM05D003169 ORTHO05D003700 2.1e-36 156.0 77 94.8
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 3.4e-34 148.7 137 57.7
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 1.7e-33 146.4 122 61.5
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 1.7e-33 146.4 124 59.7
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 3.7e-33 145.2 137 56.9
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 4.9e-33 144.8 135 56.3
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 4.9e-33 144.8 136 56.6
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 6.3e-33 144.4 135 56.3
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 6.3e-33 144.4 135 53.3
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 8.3e-33 144.1 135 56.3
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 1.1e-32 143.7 137 56.2
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 1.4e-32 143.3 122 57.4
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 1.8e-32 142.9 136 54.4
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 3.1e-32 142.1 137 55.5
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 7.0e-32 141.0 122 54.9
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 1.2e-31 140.2 137 53.3
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 1.2e-31 140.2 137 53.3
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 1.2e-31 140.2 137 53.3
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 1.6e-31 139.8 135 51.1
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 2.0e-31 139.4 122 56.6
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 2.0e-31 139.4 122 56.6
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 2.7e-31 139.0 137 52.6
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 3.5e-31 138.7 137 52.6
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 4.5e-31 138.3 135 49.6
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 5.9e-31 137.9 135 53.3
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 1.0e-30 137.1 135 52.6
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 2.3e-30 136.0 135 51.1
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 2.9e-30 135.6 135 49.6
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 3.8e-30 135.2 139 50.4
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 5.0e-30 134.8 127 53.5
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 6.6e-30 134.4 137 49.6
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 6.6e-30 134.4 122 54.9
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 8.6e-30 134.0 137 50.4
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 1.1e-29 133.7 135 47.4
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 1.1e-29 133.7 157 47.1
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 1.1e-29 133.7 140 48.6
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.1e-29 133.7 133 52.6
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 1.5e-29 133.3 137 50.4
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.5e-29 133.3 137 50.4
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 1.9e-29 132.9 137 50.4
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.9e-29 132.9 137 50.4
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 1.9e-29 132.9 140 47.9
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 1.9e-29 132.9 138 49.3
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 2.5e-29 132.5 118 55.9
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 3.3e-29 132.1 134 51.5
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.3e-29 132.1 137 50.4
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 3.3e-29 132.1 137 51.1
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 4.2e-29 131.7 143 47.6
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 4.2e-29 131.7 118 52.5
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 4.2e-29 131.7 143 45.5
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 4.2e-29 131.7 129 51.9
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 7.2e-29 131.0 118 52.5
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 9.5e-29 130.6 135 46.7
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 1.2e-28 130.2 135 51.1
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 1.2e-28 130.2 140 47.1
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 1.6e-28 129.8 129 53.5
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 1.6e-28 129.8 142 50.0
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 2.1e-28 129.4 143 47.6
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 2.8e-28 129.0 137 52.6
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 2.8e-28 129.0 137 47.4
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 3.6e-28 128.6 137 52.6
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 3.6e-28 128.6 137 52.6
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 3.6e-28 128.6 137 52.6
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 3.6e-28 128.6 137 52.6
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 3.6e-28 128.6 137 52.6
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 3.6e-28 128.6 141 47.5
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 3.6e-28 128.6 137 51.8
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 4.7e-28 128.3 137 51.8
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 6.1e-28 127.9 141 52.5
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 6.1e-28 127.9 133 48.1
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 6.1e-28 127.9 139 47.5
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 8.0e-28 127.5 116 56.0
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 8.0e-28 127.5 118 53.4
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 1.4e-27 126.7 140 49.3
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.4e-27 126.7 124 53.2
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 1.4e-27 126.7 133 50.4
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 1.8e-27 126.3 122 54.9
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 1.8e-27 126.3 122 51.6
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 2.3e-27 125.9 124 52.4
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 2.3e-27 125.9 124 52.4
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 2.3e-27 125.9 143 44.8
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 5.2e-27 124.8 118 50.8
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 6.8e-27 124.4 137 48.9
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 1.2e-26 123.6 135 49.6
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 1.2e-26 123.6 130 46.9
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 1.5e-26 123.2 132 50.8
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 2.6e-26 122.5 103 55.3
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 2.6e-26 122.5 133 50.4
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 3.4e-26 122.1 148 42.6
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 4.4e-26 121.7 133 48.1
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 5.7e-26 121.3 135 48.1
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 7.5e-26 120.9 135 48.9
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 7.5e-26 120.9 127 49.6
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 7.5e-26 120.9 141 50.4
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 9.8e-26 120.6 157 39.5
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 2.2e-25 119.4 135 45.9
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 2.9e-25 119.0 135 48.1
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 1.1e-24 117.1 117 48.7
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 4.1e-24 115.2 121 46.3
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 1.7e-22 109.8 121 43.0
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 2.5e-21 105.9 104 48.1
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 7.3e-21 104.4 129 41.9
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 2.8e-20 102.4 113 46.0
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 5.2e-19 98.2 135 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 2.9e-17 92.4 140 36.4
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 6.4e-17 91.3 138 37.0
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 1.1e-16 90.5 122 41.8
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 3.2e-16 89.0 89 48.3
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 1.9e-13 79.7 149 36.2
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 5.6e-13 78.2 126 39.7
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 9.5e-13 77.4 88 46.6
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 2.1e-12 76.3 47 76.6
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 2.8e-12 75.9 47 70.2
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 2.8e-12 75.9 47 70.2
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 2.8e-12 75.9 47 70.2
Cpa.g.sc32.149 Carica papaya HOM05D003169 ORTHO05D003700 4.7e-12 75.1 76 46.1
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.4e-11 73.6 47 72.3
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 1.4e-11 73.6 47 70.2
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 5.2e-11 71.6 52 63.5
Nitab4.5_0020695g0020 Nicotiana tabacum HOM05D003169 ORTHO05D036887 4.4e-10 68.6 96 35.4
SEGI_24184 Sequoiadendron giganteum HOM05D003169 ORTHO05D000014 2.2e-09 66.2 101 38.6
SMO358G0497 Selaginella moellendorffii HOM05D003169 ORTHO05D003700 8.3e-09 64.3 36 80.6
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 2.7e-07 59.3 42 64.3


User provided reference genes

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