Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 1.6e-79 299.3 140 100.0
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 1.3e-46 189.9 113 77.9
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 9.0e-27 124.0 108 57.4
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 1.2e-26 123.6 130 51.5
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 3.4e-26 122.1 130 51.5
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 1.3e-25 120.2 115 55.7
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 3.8e-25 118.6 115 50.4
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 4.9e-25 118.2 133 50.4
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 4.9e-25 118.2 110 57.3
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 8.4e-25 117.5 110 53.6
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.1e-24 117.1 127 48.8
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.4e-24 116.7 115 49.6
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.4e-24 116.7 115 53.9
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 1.9e-24 116.3 131 48.1
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.4e-24 115.9 115 49.6
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 2.4e-24 115.9 115 53.0
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 3.2e-24 115.5 135 47.4
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 3.2e-24 115.5 134 45.5
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 7.1e-24 114.4 126 49.2
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 7.1e-24 114.4 113 53.1
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 7.1e-24 114.4 113 53.1
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 7.1e-24 114.4 115 52.2
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 7.1e-24 114.4 115 50.4
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 7.1e-24 114.4 115 50.4
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 9.3e-24 114.0 114 50.0
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.2e-23 113.6 112 54.5
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 1.6e-23 113.2 128 47.7
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 1.6e-23 113.2 119 47.1
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.6e-23 113.2 112 56.2
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 1.6e-23 113.2 110 52.7
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.6e-23 113.2 128 48.4
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 2.1e-23 112.8 110 55.5
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 2.1e-23 112.8 110 55.5
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.7e-23 112.5 130 46.9
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.7e-23 112.5 130 46.9
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 2.7e-23 112.5 115 51.3
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 3.5e-23 112.1 115 53.9
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 4.6e-23 111.7 122 47.5
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 4.6e-23 111.7 129 48.8
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 6.0e-23 111.3 116 50.0
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 7.9e-23 110.9 128 45.3
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.0e-22 110.5 128 46.9
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.0e-22 110.5 129 47.3
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 1.8e-22 109.8 126 48.4
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 1.8e-22 109.8 134 45.5
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 3.0e-22 109.0 134 47.0
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.0e-22 109.0 130 45.4
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 3.0e-22 109.0 110 50.9
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 3.9e-22 108.6 126 47.6
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 5.1e-22 108.2 110 50.0
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 5.1e-22 108.2 119 50.4
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 5.1e-22 108.2 110 50.9
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 5.1e-22 108.2 114 51.8
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 6.7e-22 107.8 126 46.0
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 6.7e-22 107.8 126 46.0
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 6.7e-22 107.8 126 46.0
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 6.7e-22 107.8 139 43.9
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 8.7e-22 107.5 126 46.8
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 8.7e-22 107.5 130 44.6
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 8.7e-22 107.5 127 44.9
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.1e-21 107.1 134 45.5
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.1e-21 107.1 124 47.6
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 1.1e-21 107.1 124 47.6
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 1.1e-21 107.1 124 47.6
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.5e-21 106.7 126 46.0
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.5e-21 106.7 124 46.8
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.5e-21 106.7 126 46.0
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.5e-21 106.7 110 50.9
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 1.5e-21 106.7 134 42.5
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 1.9e-21 106.3 137 44.5
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 1.9e-21 106.3 137 44.5
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.9e-21 106.3 114 49.1
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.5e-21 105.9 137 46.0
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 2.5e-21 105.9 117 47.9
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 3.3e-21 105.5 109 49.5
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 3.3e-21 105.5 134 45.5
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 3.3e-21 105.5 134 45.5
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 3.3e-21 105.5 114 46.5
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 3.3e-21 105.5 115 47.0
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.3e-21 105.1 134 44.0
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 4.3e-21 105.1 114 48.2
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 5.6e-21 104.8 110 49.1
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 5.6e-21 104.8 110 47.3
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 7.4e-21 104.4 113 50.4
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 7.4e-21 104.4 115 45.2
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 7.4e-21 104.4 117 48.7
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 7.4e-21 104.4 138 42.0
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 7.4e-21 104.4 112 49.1
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 7.4e-21 104.4 112 47.3
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 9.6e-21 104.0 128 45.3
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 9.6e-21 104.0 114 47.4
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 9.6e-21 104.0 134 44.8
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.3e-20 103.6 110 49.1
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.3e-20 103.6 114 47.4
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.3e-20 103.6 134 42.5
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.3e-20 103.6 132 44.7
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.3e-20 103.6 130 43.8
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.3e-20 103.6 115 48.7
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 1.6e-20 103.2 126 43.7
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 2.1e-20 102.8 116 47.4
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.1e-20 102.8 119 46.2
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 2.1e-20 102.8 132 43.9
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 3.7e-20 102.1 112 47.3
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 3.7e-20 102.1 114 46.5
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 8.1e-20 100.9 118 45.8
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.1e-19 100.5 119 47.1
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.0e-19 98.6 127 40.2
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 4.0e-19 98.6 142 41.5
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 4.0e-19 98.6 117 46.2
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 9.0e-19 97.4 115 47.0
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 3.4e-18 95.5 108 45.4
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.5e-18 95.1 126 41.3
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 4.5e-18 95.1 129 45.0
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.0e-17 94.0 114 43.0
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 2.9e-17 92.4 123 41.5
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.4e-16 90.1 90 52.2
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.4e-16 90.1 136 38.2
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.5e-16 89.4 105 46.7
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.2e-16 89.0 109 44.0
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 5.5e-16 88.2 79 51.9
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 9.3e-16 87.4 124 37.9
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 9.3e-16 87.4 120 41.7
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.2e-15 87.0 129 38.0
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 6.0e-15 84.7 129 37.2
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 6.0e-15 84.7 129 37.2
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 6.7e-14 81.3 124 34.7
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.1e-13 80.5 99 46.5
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 9.6e-13 77.4 115 37.4
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.7e-12 75.5 73 52.1
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 6.3e-12 74.7 129 37.2
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 2.6e-10 69.3 73 45.2
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 5.0e-09 65.1 144 34.0
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 7.2e-08 61.2 80 40.0
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 2.1e-07 59.7 92 35.9
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 8.7e-06 54.3 51 49.0


User provided reference genes

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