Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36215 Trifolium pratense HOM05D003084 ORTHO05D003580 2.0e-92 342.4 172 100.0
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 1.7e-35 153.3 172 50.0
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 2.9e-35 152.5 172 50.6
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 2.9e-35 152.5 172 49.4
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 2.9e-35 152.5 172 49.4
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 3.8e-35 152.1 172 50.0
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 50.0
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 50.0
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 4.9e-35 151.8 172 49.4
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 6.5e-35 151.4 172 48.8
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 6.5e-35 151.4 172 48.8
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 8.4e-35 151.0 172 49.4
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.1e-34 150.6 172 48.8
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 49.4
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 48.8
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 48.3
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 49.4
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 48.8
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 49.4
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 49.4
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 48.3
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 48.8
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 1.4e-34 150.2 172 48.8
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.9e-34 149.8 172 48.3
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 1.9e-34 149.8 172 48.8
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 2.5e-34 149.4 172 48.3
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 2.5e-34 149.4 172 48.3
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.5e-34 149.4 172 48.8
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 3.2e-34 149.1 172 48.8
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.8
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.3
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.8
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.8
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.8
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.8
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.3
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.3
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.8
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.8
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.3
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 4.2e-34 148.7 172 48.3
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 5.5e-34 148.3 172 47.7
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 5.5e-34 148.3 172 47.7
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 1.2e-33 147.1 172 48.8
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.2e-33 147.1 172 48.3
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 1.2e-33 147.1 172 48.8
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 2.7e-33 146.0 172 48.3
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 4.6e-33 145.2 172 47.7
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.6e-33 145.2 172 47.7
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.6e-33 145.2 172 47.7
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.6e-33 145.2 172 47.1
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 6.0e-33 144.8 172 47.7
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 7.9e-33 144.4 172 44.2
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 1.0e-32 144.1 172 45.3
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 2.3e-32 142.9 172 47.7
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 3.0e-32 142.5 172 48.3
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 3.0e-32 142.5 172 48.3
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 3.0e-32 142.5 172 47.1
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 3.9e-32 142.1 172 46.5
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 5.1e-32 141.7 172 46.5
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 8.7e-32 141.0 172 43.6
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.5e-31 139.4 172 44.2
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 7.4e-31 137.9 172 43.0
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 1.3e-30 137.1 172 44.2
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.3e-30 137.1 172 44.8
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 2.8e-30 136.0 172 45.3
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 4.8e-30 135.2 172 43.6
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 4.8e-30 135.2 200 42.0
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 6.3e-30 134.8 154 48.7
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 3.1e-29 132.5 159 47.8
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.1e-29 132.1 151 47.7
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 6.9e-29 131.3 180 45.6
PGSC0003DMG400043641 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.2e-28 130.6 159 46.5
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 7.6e-28 127.9 135 52.6
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 4.6e-25 118.6 172 41.9
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 1.3e-24 117.1 135 47.4
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 5.7e-23 111.7 143 44.8
QL09p053393 Quercus lobata HOM05D003084 ORTHO05D003580 4.5e-20 102.1 165 40.0
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 1.4e-18 97.1 136 41.9
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 5.5e-18 95.1 172 38.4
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 3.6e-17 92.4 99 51.5
PGSC0003DMG400009195 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.8e-16 90.1 172 34.9
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 8.8e-16 87.8 114 43.9
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 2.0e-12 76.6 172 32.6
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 4.5e-12 75.5 79 50.6
DCAR_024485 Daucus carota HOM05D003084 ORTHO05D003580 1.4e-10 70.5 91 44.0
MD12G1233800 Malus domestica HOM05D003084 ORTHO05D003580 2.5e-10 69.7 172 33.7
Atru.chr7.2124 Acer truncatum HOM05D003084 ORTHO05D003580 8.8e-08 61.2 71 46.5


User provided reference genes

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