Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 3.6e-238 827.8 396 100.0
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 4.5e-209 731.1 397 89.2
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 4.7e-206 721.1 401 88.0
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 7.0e-202 707.2 403 87.1
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 3.7e-195 684.9 393 85.5
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.0e-192 675.2 397 83.6
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 8.6e-192 673.7 400 82.5
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 2.1e-190 669.1 397 83.1
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.3e-189 665.6 394 82.0
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 8.9e-189 663.7 394 82.0
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 9.2e-186 653.7 334 91.3
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 6.0e-185 651.0 401 80.5
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 2.3e-184 649.0 334 90.4
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 5.1e-184 647.9 334 90.7
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 6.6e-184 647.5 403 79.9
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 4.3e-183 644.8 396 79.0
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 4.3e-183 644.8 334 90.4
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 9.5e-183 643.7 400 79.5
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.2e-182 643.3 382 82.7
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 4.7e-182 641.3 394 79.9
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 6.2e-182 641.0 339 89.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.1e-181 640.2 416 76.2
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.1e-181 640.2 346 87.6
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.4e-181 639.8 346 86.1
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.8e-181 639.4 334 89.5
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.8e-181 639.4 334 89.5
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 4.0e-181 638.3 407 78.9
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.2e-181 637.9 334 89.2
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 5.2e-181 637.9 364 82.7
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 5.2e-181 637.9 374 80.7
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 6.8e-181 637.5 415 76.1
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 6.8e-181 637.5 401 78.8
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-180 636.7 334 89.2
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 2.0e-180 636.0 403 76.4
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 3.4e-180 635.2 345 86.7
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 5.8e-180 634.4 354 84.7
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.6e-180 634.0 395 78.7
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 9.9e-180 633.6 383 79.4
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 2.9e-179 632.1 347 86.5
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 2.9e-179 632.1 349 85.4
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 4.9e-179 631.3 370 80.5
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 4.9e-179 631.3 404 78.0
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 4.9e-179 631.3 375 80.8
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 8.4e-179 630.6 384 78.6
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 8.4e-179 630.6 394 76.9
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 8.4e-179 630.6 385 79.2
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.4e-178 629.8 383 78.9
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.4e-178 629.8 370 80.3
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-178 629.4 399 77.2
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.4e-178 629.0 396 77.3
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 4.1e-178 628.2 375 80.0
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 4.1e-178 628.2 384 78.9
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 4.1e-178 628.2 401 77.1
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 5.4e-178 627.9 346 85.0
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 5.4e-178 627.9 346 85.0
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 7.1e-178 627.5 346 85.0
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 9.2e-178 627.1 383 78.6
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-177 626.7 396 77.0
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.2e-177 626.7 405 76.0
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.6e-177 626.3 357 84.0
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.6e-177 626.3 399 78.2
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.1e-177 625.9 399 76.9
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 2.1e-177 625.9 357 83.2
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 3.5e-177 625.2 383 78.3
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 3.5e-177 625.2 340 86.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 4.6e-177 624.8 374 80.5
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 6.0e-177 624.4 404 76.5
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 6.0e-177 624.4 336 87.2
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 7.8e-177 624.0 389 77.6
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 7.8e-177 624.0 338 87.9
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.0e-176 623.6 391 77.5
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 1.3e-176 623.2 387 77.3
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.7e-176 622.9 346 85.0
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.7e-176 622.9 358 81.0
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 3.0e-176 622.1 364 81.3
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 3.9e-176 621.7 346 85.5
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 5.1e-176 621.3 338 88.2
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 6.6e-176 620.9 403 76.4
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.5e-175 619.8 404 76.0
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 2.5e-175 619.0 376 79.0
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.3e-175 618.2 402 75.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 3.6e-174 615.1 404 75.0
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 6.2e-174 614.4 400 75.8
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.8e-173 612.8 403 74.4
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.8e-173 612.8 338 84.9
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 9.0e-173 610.5 395 76.2
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 2.0e-172 609.4 374 77.3
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.4e-172 608.6 362 80.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 7.6e-172 607.4 394 74.6
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 7.6e-172 607.4 368 80.2
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.7e-171 606.3 354 81.1
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 4.9e-171 604.7 400 75.0
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 4.9e-171 604.7 340 83.5
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 4.9e-171 604.7 457 67.6
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.4e-170 603.2 341 83.9
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 3.2e-170 602.1 428 71.3
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 3.2e-170 602.1 308 90.6
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.2e-169 600.1 349 81.9
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.1e-167 593.6 377 77.5
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.1e-167 593.6 385 75.8
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.3e-167 592.0 302 90.1
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 7.3e-167 590.9 398 72.4
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.4e-165 586.6 313 86.9
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.6e-164 582.4 318 87.1
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 7.6e-164 580.9 370 76.8
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-163 578.6 373 76.1
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 8.4e-163 577.4 348 81.3
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 3.5e-161 572.0 414 71.3
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 9.6e-159 563.9 368 76.4
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.8e-158 562.4 315 83.5
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.1e-157 560.5 401 70.3
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 6.9e-157 557.8 407 71.5
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.9e-157 557.8 382 71.7
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 2.2e-155 552.7 497 58.8
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 2.7e-153 545.8 554 54.7
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.5e-151 540.0 350 73.4
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.3e-151 538.5 402 66.4
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 5.6e-151 538.1 342 73.4
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 5.6e-151 538.1 550 53.6
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 4.0e-149 531.9 350 72.3
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 1.6e-145 520.0 303 78.2
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 5.0e-139 498.4 243 90.5
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 6.3e-134 481.5 342 68.1
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 7.2e-130 468.0 326 69.6
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 6.7e-128 461.5 393 62.6
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.1e-125 452.6 346 62.4
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.7e-123 446.8 308 66.9
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-114 417.5 258 77.9
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.6e-113 413.7 247 81.0
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 4.0e-104 382.5 352 55.7
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 4.0e-104 382.5 214 84.1
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 6.8e-104 381.7 212 84.0
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 7.5e-103 378.3 340 55.9
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.4e-95 352.4 261 68.6
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.5e-90 334.7 202 76.7
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 2.8e-89 333.2 288 54.5
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 7.3e-82 308.5 224 70.1
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.6e-68 264.2 317 42.9
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 6.6e-67 258.8 127 93.7
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.1e-66 258.1 322 43.2
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.1e-66 258.1 323 41.8
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 1.2e-65 254.6 310 42.9
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 4.7e-65 252.7 341 39.6
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 2.7e-60 236.9 304 41.8
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.5e-58 231.1 182 65.9
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.9e-53 214.2 326 39.0
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 4.6e-52 209.5 247 42.5
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 6.9e-48 195.7 158 63.3
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 6.9e-48 195.7 115 82.6
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 2.4e-32 144.1 92 76.1
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 4.1e-24 116.7 56 89.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 2.9e-22 110.5 62 87.1
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 9.4e-21 105.5 50 88.0
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.4e-16 90.9 93 57.0
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 4.1e-16 90.1 49 83.7
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 2.9e-14 84.0 71 62.0
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 1.9e-13 81.3 166 39.2
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.8e-11 74.7 33 87.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 2.6e-10 70.9 34 82.4
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 7.7e-07 59.3 31 77.4


User provided reference genes

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