Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 2.2e-24 114.8 57 100.0
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.2e-24 114.8 57 100.0
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.4e-23 112.1 56 98.2
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.4e-23 112.1 56 98.2
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.4e-23 112.1 56 98.2
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.4e-23 112.1 56 98.2
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 2.5e-23 111.3 56 96.4
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 4.2e-23 110.5 56 96.4
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 4.2e-23 110.5 56 96.4
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 4.2e-23 110.5 56 98.2
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 4.2e-23 110.5 56 96.4
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 5.5e-23 110.2 56 94.6
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 5.5e-23 110.2 56 94.6
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 5.5e-23 110.2 56 94.6
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 7.1e-23 109.8 56 96.4
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 7.1e-23 109.8 56 96.4
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 7.1e-23 109.8 56 92.9
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 7.1e-23 109.8 56 92.9
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 7.1e-23 109.8 56 92.9
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 7.1e-23 109.8 56 96.4
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 7.1e-23 109.8 56 94.6
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 9.3e-23 109.4 56 94.6
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.2e-22 109.0 56 92.9
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.2e-22 109.0 56 92.9
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.2e-22 109.0 56 92.9
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.2e-22 109.0 56 92.9
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.2e-22 109.0 56 92.9
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.2e-22 109.0 56 92.9
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 91.1
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 94.6
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 92.9
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 92.9
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 92.9
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 94.6
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 94.6
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 94.6
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 94.6
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 92.9
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 94.6
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.6e-22 108.6 56 94.6
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.1e-22 108.2 56 94.6
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.1e-22 108.2 56 94.6
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 2.1e-22 108.2 56 92.9
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.1e-22 108.2 56 94.6
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.1e-22 108.2 56 94.6
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 2.7e-22 107.8 56 91.1
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 2.7e-22 107.8 56 92.9
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 3.5e-22 107.5 56 92.9
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.5e-22 107.5 56 94.6
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.5e-22 107.5 56 92.9
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 3.5e-22 107.5 56 91.1
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 3.5e-22 107.5 55 94.5
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 3.5e-22 107.5 56 92.9
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 4.6e-22 107.1 56 92.9
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.6e-22 107.1 56 92.9
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.6e-22 107.1 56 92.9
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.6e-22 107.1 56 92.9
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 4.6e-22 107.1 56 91.1
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 6.0e-22 106.7 56 91.1
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 6.0e-22 106.7 56 92.9
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 6.0e-22 106.7 56 92.9
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 6.0e-22 106.7 56 92.9
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 7.9e-22 106.3 56 92.9
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 7.9e-22 106.3 56 91.1
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.9e-22 106.3 56 91.1
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.9e-22 106.3 56 91.1
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 7.9e-22 106.3 56 91.1
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 7.9e-22 106.3 56 91.1
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 7.9e-22 106.3 56 91.1
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 7.9e-22 106.3 56 91.1
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.0e-21 105.9 56 91.1
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.0e-21 105.9 56 89.3
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.0e-21 105.9 56 92.9
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.0e-21 105.9 56 91.1
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.0e-21 105.9 56 92.9
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.0e-21 105.9 56 92.9
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.3e-21 105.5 56 91.1
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.8e-21 105.1 56 89.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.8e-21 105.1 56 91.1
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.8e-21 105.1 56 91.1
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.8e-21 105.1 56 91.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.8e-21 105.1 56 91.1
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 91.1
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 91.1
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 91.1
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 87.5
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 89.3
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 91.1
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.3e-21 104.8 56 91.1
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.0e-21 104.4 56 91.1
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.0e-21 104.4 56 91.1
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 3.0e-21 104.4 56 89.3
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 3.0e-21 104.4 56 89.3
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 3.0e-21 104.4 56 89.3
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 3.0e-21 104.4 56 89.3
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.9e-21 104.0 53 92.5
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 3.9e-21 104.0 56 85.7
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.9e-21 104.0 56 85.7
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.9e-21 104.0 56 85.7
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.9e-21 104.0 56 85.7
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.9e-21 104.0 56 91.1
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 5.1e-21 103.6 56 89.3
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 5.1e-21 103.6 64 84.4
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 5.1e-21 103.6 56 89.3
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 6.7e-21 103.2 56 89.3
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 6.7e-21 103.2 56 91.1
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 8.7e-21 102.8 56 87.5
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.5e-20 102.1 56 89.3
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.5e-20 101.3 73 75.3
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 5.7e-20 100.1 55 89.1
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 5.7e-20 100.1 56 83.9
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 1.6e-19 98.6 56 85.7
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 2.8e-19 97.8 56 82.1
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.8e-19 97.8 56 82.1
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 3.7e-19 97.4 81 66.7
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 3.7e-19 97.4 81 66.7
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 8.2e-19 96.3 56 80.4
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.4e-18 95.5 83 65.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.8e-18 95.1 70 71.4
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.8e-18 95.1 59 79.7
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 2.4e-18 94.7 56 85.7
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 9.0e-18 92.8 55 80.0
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 7.6e-17 89.7 89 58.4
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 1.0e-16 89.4 57 73.7
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 2.2e-16 88.2 55 74.5
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.3e-12 74.3 57 71.9
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.3e-11 72.4 36 94.4
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.7e-11 72.0 35 94.3
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 2.2e-11 71.6 34 97.1
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.2e-11 71.6 34 97.1
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 6.3e-11 70.1 34 94.1
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 8.2e-11 69.7 34 97.1
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.8e-08 60.8 56 58.9
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 5.5e-07 57.0 27 96.3


User provided reference genes

Program Settings