Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 4.8e-60 234.2 109 100.0
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 94.1
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 94.1
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 94.1
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 94.1
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 94.1
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 94.1
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 94.1
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 96.1
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 94.1
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 1.4e-22 109.8 51 94.1
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 1.8e-22 109.4 51 94.1
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 94.1
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 94.1
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 94.1
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 94.1
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 94.1
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 94.1
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 92.2
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 92.2
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 92.2
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 92.2
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.0e-22 108.6 51 94.1
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.2e-21 106.7 51 92.2
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.2e-21 106.7 51 92.2
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 1.2e-21 106.7 51 92.2
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 1.5e-21 106.3 51 92.2
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.5e-21 106.3 51 92.2
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 2.0e-21 105.9 51 90.2
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.6e-21 105.5 51 90.2
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.6e-21 105.5 51 90.2
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.6e-21 105.5 51 92.2
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 2.6e-21 105.5 52 94.2
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 3.4e-21 105.1 51 90.2
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 4.4e-21 104.8 49 93.9
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 5.7e-21 104.4 49 91.8
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 5.7e-21 104.4 51 90.2
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 5.7e-21 104.4 51 90.2
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 5.7e-21 104.4 51 90.2
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 88.2
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 90.2
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 90.2
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 90.2
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 90.2
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 90.2
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 90.2
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 90.2
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 88.2
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 7.5e-21 104.0 51 90.2
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 9.8e-21 103.6 51 90.2
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 9.8e-21 103.6 51 88.2
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 9.8e-21 103.6 51 90.2
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.2e-20 102.4 51 90.2
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.7e-20 101.7 51 86.3
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 4.9e-20 101.3 49 89.8
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 4.9e-20 101.3 51 88.2
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 6.3e-20 100.9 52 86.5
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 6.3e-20 100.9 52 90.4
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 6.3e-20 100.9 52 88.5
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 6.3e-20 100.9 52 88.5
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 6.3e-20 100.9 52 90.4
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 6.3e-20 100.9 51 88.2
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 8.3e-20 100.5 51 86.3
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.1e-19 100.1 47 93.6
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.4e-19 99.8 47 91.5
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 1.4e-19 99.8 46 93.5
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 1.8e-19 99.4 51 86.3
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 1.8e-19 99.4 51 86.3
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.1e-19 98.6 51 88.2
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 4.1e-19 98.2 46 91.3
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 7.0e-19 97.4 51 84.3
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 9.2e-19 97.1 63 71.4
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 1.2e-18 96.7 44 93.2
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 1.2e-18 96.7 49 85.7
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 2.0e-18 95.9 46 91.3
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.0e-18 95.9 54 77.8
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.0e-18 95.9 54 77.8
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.0e-18 95.9 54 77.8
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 2.7e-18 95.5 44 93.2
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 2.7e-18 95.5 44 93.2
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 2.7e-18 95.5 44 93.2
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.7e-18 95.5 44 93.2
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.7e-18 95.5 44 93.2
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 3.5e-18 95.1 44 90.9
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 3.5e-18 95.1 48 87.5
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 5.9e-18 94.4 53 83.0
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.0e-17 93.6 53 79.2
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.0e-17 93.6 53 79.2
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 1.0e-17 93.6 44 90.9
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 1.0e-17 93.6 44 90.9
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 1.0e-17 93.6 46 87.0
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 1.0e-17 93.6 63 68.3
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 1.7e-17 92.8 44 90.9
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 1.7e-17 92.8 48 83.3
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.3e-17 92.4 44 90.9
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 2.3e-17 92.4 45 88.9
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.9e-17 92.0 45 88.9
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 3.8e-17 91.7 46 87.0
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 5.0e-17 91.3 50 78.0
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 5.0e-17 91.3 44 88.6
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 5.0e-17 91.3 53 81.1
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.1e-16 90.1 44 86.4
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.1e-16 90.1 59 72.9
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.5e-16 89.0 46 78.3
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.5e-16 89.0 46 78.3
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.5e-16 89.0 53 75.5
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 2.5e-16 89.0 49 81.6
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 3.3e-16 88.6 44 86.4
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 4.3e-16 88.2 49 81.6
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 4.3e-16 88.2 49 81.6
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 5.6e-16 87.8 44 86.4
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 5.6e-16 87.8 44 86.4
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 5.6e-16 87.8 44 86.4
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 5.6e-16 87.8 44 86.4
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 5.6e-16 87.8 45 88.9
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 5.6e-16 87.8 40 92.5
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 9.5e-16 87.0 45 84.4
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.2e-15 86.7 53 73.6
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 4.7e-15 84.7 43 83.7
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 1.0e-14 83.6 42 85.7
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 1.4e-14 83.2 51 68.6
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.8e-14 82.8 47 80.9
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.8e-14 82.8 47 80.9
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.8e-14 82.8 44 84.1
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 1.8e-14 82.8 42 83.3
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 2.3e-14 82.4 54 66.7
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 3.0e-14 82.0 52 73.1
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 6.8e-14 80.9 42 81.0
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 8.9e-14 80.5 44 75.0
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 1.2e-13 80.1 44 81.8
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 4.4e-13 78.2 43 74.4
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 1.7e-12 76.3 66 59.1
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 8.3e-12 73.9 53 62.3
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 1.9e-11 72.8 83 48.2
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 3.2e-11 72.0 38 76.3
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 3.2e-11 72.0 34 91.2
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 7.0e-11 70.9 44 72.7
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 1.3e-09 66.6 57 50.9
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 2.3e-09 65.9 82 47.6
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 6.6e-09 64.3 41 70.7
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 1.1e-08 63.5 32 81.2
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 1.1e-08 63.5 38 71.1
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 1.5e-08 63.2 56 50.0
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.5e-08 63.2 56 50.0
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 2.5e-08 62.4 56 50.0
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 4.3e-08 61.6 31 87.1
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 4.3e-08 61.6 31 87.1
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 4.3e-08 61.6 44 56.8
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 1.4e-06 56.6 37 59.5
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 4.0e-06 55.1 25 96.0
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 8.9e-06 53.9 49 49.0


User provided reference genes

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