Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 4974.1 2536 100.0
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 4197.9 2574 83.6
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 4194.8 2568 84.0
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 4177.5 2561 84.5
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 3473.7 2539 71.7
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 3457.9 2553 70.9
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 3418.6 2583 69.5
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 3192.5 2611 64.5
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 3139.4 2588 64.3
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 2841.6 2085 71.2
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 2658.2 1980 69.6
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2328.5 2609 50.3
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2236.5 2582 48.8
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2229.9 2615 48.3
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2227.2 2609 48.2
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2216.8 2610 48.6
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2210.6 2623 47.9
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2209.9 2598 49.0
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2206.8 2610 47.8
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2189.5 2658 47.2
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2132.8 2593 47.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2097.4 2587 46.3
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2093.5 2574 46.7
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2073.9 2609 45.6
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2058.9 2635 45.3
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2058.1 2587 45.8
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2044.2 2612 45.1
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 2013.4 2591 45.3
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1991.9 2611 44.7
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1984.9 2603 44.2
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1971.8 2669 44.4
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1937.5 2584 44.3
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1928.3 2573 45.3
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1921.7 2652 43.2
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1920.2 2230 48.4
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1917.1 2703 43.2
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1892.5 2601 42.4
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1889.8 2575 44.6
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1872.8 2573 44.0
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1870.5 2573 43.5
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1857.8 2601 42.8
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1827.4 2601 43.4
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1824.3 2574 42.6
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1798.9 2375 44.1
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1783.8 2590 41.5
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1761.1 2568 42.0
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1752.3 2527 41.8
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1742.6 2584 41.5
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1741.5 2609 40.9
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1736.5 2601 41.1
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1735.7 2577 41.2
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1730.3 2647 40.5
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1711.0 2596 40.9
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1688.7 2607 40.1
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1684.8 2660 39.9
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1684.1 2652 40.2
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1681.8 2599 40.0
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1670.6 2641 39.4
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1663.7 2641 39.5
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1661.0 2627 40.2
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1656.0 2570 40.7
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1645.2 2573 39.8
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1640.9 2601 39.8
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1639.0 2543 40.5
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1635.9 2594 40.3
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1629.4 2627 39.5
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1611.3 2531 40.5
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1598.2 2541 39.4
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1596.3 2739 37.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1585.9 2653 38.9
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1582.4 2628 39.0
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1532.7 2665 38.5
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1521.9 2579 38.5
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1515.0 2625 38.2
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1498.0 2623 38.2
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1495.3 2662 37.5
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1486.9 2440 38.6
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1485.7 2659 37.7
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1480.3 2567 36.9
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1466.4 1791 46.5
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1450.3 2319 38.6
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1388.2 2568 36.6
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1352.8 2641 35.4
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1349.7 2267 38.0
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1335.5 2594 36.6
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1332.8 2033 41.0
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1290.8 2574 35.0
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1273.5 2577 35.2
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1239.2 1743 42.0
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1236.1 2240 36.9
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1228.8 2318 35.0
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1210.3 2016 38.0
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1156.0 2123 37.2
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1148.3 2195 35.5
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 7.2e-300 1035.4 2477 32.3
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 3.6e-299 1033.1 1791 38.5
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.0e-289 1000.7 1700 37.3
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 8.4e-232 809.3 611 69.7
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.0e-224 785.8 780 54.9
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.5e-217 760.4 909 47.5
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 8.5e-200 703.0 536 68.7
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 4.2e-191 674.1 810 45.8
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 6.7e-189 666.8 2740 26.0
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 6.5e-176 623.6 602 58.5
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 3.6e-174 617.8 2755 25.8
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.4e-173 615.9 579 56.8
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.0e-170 603.6 1223 34.0
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 9.8e-164 583.2 1147 34.6
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 9.8e-156 556.6 2527 24.5
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 7.8e-153 547.0 2541 25.1
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 8.6e-152 543.5 2763 24.6
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 9.9e-140 503.4 736 42.5
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.6e-135 486.9 1117 33.7
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.9e-128 464.9 552 47.1
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 2.5e-127 462.2 1121 32.0
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.2e-123 449.1 771 38.5
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 2.3e-112 412.5 482 52.3
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.2e-106 392.1 912 32.5
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.3e-104 386.0 656 40.5
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.2e-99 369.4 420 49.0
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.0e-96 359.0 694 36.3
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.7e-96 357.8 857 31.9
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.8e-93 349.7 442 43.0
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 1.3e-91 343.6 321 57.9
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 4.4e-87 328.6 345 53.3
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.2e-82 312.0 468 44.7
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 6.7e-80 304.7 189 84.1
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 2.2e-78 299.7 174 86.2
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.5e-63 250.4 395 38.5
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.6e-49 202.6 199 55.3
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 3.0e-43 183.0 350 34.0
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.1e-42 181.0 330 38.8
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.6e-41 177.2 242 43.8
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 4.7e-41 175.6 413 29.8
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 8.0e-41 174.9 514 28.8
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 7.5e-39 168.3 179 54.7
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.3e-38 167.5 209 45.0
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.1e-37 164.5 330 34.8
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.7e-36 159.8 318 34.6
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.7e-36 159.8 149 53.7
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 3.4e-31 142.9 207 41.1
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 5.8e-31 142.1 348 30.2
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 1.1e-29 137.9 92 75.0
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.4e-29 136.7 207 41.1
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 9.2e-29 134.8 87 78.2
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 1.3e-27 131.0 124 50.8
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.3e-27 131.0 140 47.9
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 8.4e-22 111.7 150 43.3
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 1.6e-20 107.5 345 28.1
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 2.8e-17 96.7 213 35.7
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 6.2e-17 95.5 112 51.8
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.1e-16 94.7 236 26.7
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.7e-14 87.4 124 40.3
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 2.2e-14 87.0 104 47.1
arahy.Tifrunner.gnm1.ann1.PHJ7DT Arachis hypogaea HOM05D003876 ORTHO05D004560 2.9e-14 86.7 139 40.3
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.9e-13 84.0 82 52.4
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.6e-12 80.9 172 33.1
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.5e-12 79.7 82 50.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.5e-12 79.7 82 50.0
Psat5g198960 Pisum sativum HOM05D000263 ORTHO05D000213 1.7e-11 77.4 52 82.7
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 1.7e-11 77.4 264 28.0
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.3e-11 77.0 165 35.2
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 6.6e-11 75.5 138 31.2
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 2.5e-10 73.6 349 22.3
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 3.3e-10 73.2 111 36.0
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 2.1e-09 70.5 62 56.5
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 2.8e-09 70.1 82 50.0
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 3.6e-09 69.7 106 43.4
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.1e-09 68.6 416 25.0
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 4.0e-08 66.2 94 44.7
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 1.5e-07 64.3 95 44.2
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 8.4e-06 58.5 79 41.8


User provided reference genes

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