Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 2.3e-27 124.8 62 100.0
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 1.2e-18 95.9 55 85.5
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 3.4e-18 94.4 55 89.1
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 4.4e-18 94.0 55 85.5
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 1.7e-17 92.0 55 81.8
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 2.9e-17 91.3 55 81.8
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 6.4e-17 90.1 55 81.8
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 6.4e-17 90.1 55 81.8
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 3.2e-16 87.8 50 86.0
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 4.1e-16 87.4 55 80.0
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 5.4e-16 87.0 55 78.2
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 5.4e-16 87.0 55 78.2
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 7.0e-16 86.7 55 78.2
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.2e-15 85.9 55 78.2
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 1.7e-14 82.0 55 70.9
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 1.7e-14 82.0 55 70.9
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.9e-14 80.9 56 69.6
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 5.0e-14 80.5 55 70.9
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 5.0e-14 80.5 55 70.9
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 5.0e-14 80.5 55 70.9
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 6.6e-14 80.1 55 70.9
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 1.1e-13 79.3 55 70.9
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.1e-13 79.3 55 70.9
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.9e-13 78.6 55 69.1
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 2.5e-13 78.2 55 70.9
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 2.5e-13 78.2 57 68.4
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.3e-13 77.8 55 69.1
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 3.3e-13 77.8 55 70.9
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 3.3e-13 77.8 55 69.1
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 4.3e-13 77.4 55 69.1
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 4.3e-13 77.4 55 70.9
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.3e-13 77.4 55 69.1
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 9.5e-13 76.3 55 67.3
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 1.2e-12 75.9 55 69.1
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.2e-12 75.9 55 69.1
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 1.2e-12 75.9 55 69.1
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 2.1e-12 75.1 55 69.1
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 2.8e-12 74.7 55 67.3
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 2.8e-12 74.7 55 67.3
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 2.8e-12 74.7 55 67.3
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 2.8e-12 74.7 55 67.3
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 2.8e-12 74.7 55 67.3
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 2.8e-12 74.7 55 65.5
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 2.8e-12 74.7 55 65.5
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 3.6e-12 74.3 54 68.5
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 3.6e-12 74.3 55 69.1
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 4.7e-12 73.9 58 70.7
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 4.7e-12 73.9 54 68.5
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 4.7e-12 73.9 57 66.7
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 4.7e-12 73.9 57 66.7
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 6.2e-12 73.6 55 63.6
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 6.2e-12 73.6 55 65.5
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 8.1e-12 73.2 55 63.6
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 8.1e-12 73.2 55 63.6
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 8.1e-12 73.2 55 63.6
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 1.1e-11 72.8 54 66.7
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.1e-11 72.8 57 64.9
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 1.1e-11 72.8 55 63.6
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 1.1e-11 72.8 55 65.5
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 1.4e-11 72.4 55 63.6
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 1.8e-11 72.0 55 61.8
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 1.8e-11 72.0 55 63.6
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 2.3e-11 71.6 54 66.7
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 3.1e-11 71.2 55 61.8
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 3.1e-11 71.2 57 59.6
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 4.0e-11 70.9 55 63.6
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 4.0e-11 70.9 55 58.2
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 6.8e-11 70.1 55 61.8
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 6.8e-11 70.1 55 63.6
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 6.8e-11 70.1 55 61.8
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 6.8e-11 70.1 55 61.8
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 6.8e-11 70.1 55 60.0
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 8.9e-11 69.7 55 61.8
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.2e-10 69.3 55 58.2
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 1.2e-10 69.3 55 58.2
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 1.2e-10 69.3 54 63.0
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 1.5e-10 68.9 55 60.0
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 2.0e-10 68.6 78 48.7
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 2.0e-10 68.6 55 58.2
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 2.0e-10 68.6 55 61.8
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 2.0e-10 68.6 54 63.0
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 2.6e-10 68.2 55 61.8
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 3.4e-10 67.8 55 58.2
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 3.4e-10 67.8 55 56.4
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 3.4e-10 67.8 57 56.1
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 3.4e-10 67.8 57 57.9
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 4.4e-10 67.4 55 60.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 5.8e-10 67.0 55 58.2
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 7.5e-10 66.6 53 64.2
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 1.7e-09 65.5 55 60.0
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 2.2e-09 65.1 55 56.4
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 2.9e-09 64.7 55 58.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 4.9e-09 63.9 53 52.8
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 8.3e-09 63.2 55 56.4
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 1.1e-08 62.8 71 49.3
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 3.5e-07 57.8 55 54.5
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 3.0e-06 54.7 55 50.9


User provided reference genes

Program Settings