Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 0.0e+00 1157.1 660 100.0
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 8.8e-266 920.2 663 82.5
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 3.5e-254 881.7 663 76.5
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-240 836.3 677 75.8
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.5e-201 706.8 676 63.9
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.0e-198 694.9 676 63.8
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 4.9e-192 675.2 682 60.4
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.6e-182 643.7 661 59.8
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 3.5e-182 642.5 690 58.3
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.6e-171 607.1 671 59.0
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 3.3e-164 582.8 681 54.9
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 7.7e-161 571.6 686 52.5
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 6.5e-160 568.5 683 53.9
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 2.5e-159 566.6 686 51.3
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 4.2e-159 565.8 687 53.0
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 9.4e-159 564.7 673 54.5
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.1e-158 563.5 689 53.0
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 8.8e-157 558.1 683 53.3
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 1.5e-156 557.4 675 52.0
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.5e-156 557.4 685 52.3
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 1.5e-156 557.4 684 53.1
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 2.0e-156 557.0 685 53.9
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.6e-156 556.6 686 52.6
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 2.6e-156 556.6 683 53.6
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.4e-156 555.1 680 53.8
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.8e-155 553.1 686 52.8
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 3.7e-155 552.7 685 53.1
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.1e-154 551.2 682 52.3
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.1e-154 551.2 678 50.9
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.8e-154 550.4 685 52.1
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 2.4e-154 550.1 680 48.8
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.1e-154 549.7 686 52.6
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.1e-154 549.7 686 52.5
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 5.3e-154 548.9 682 52.5
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 7.0e-154 548.5 686 52.9
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.2e-153 547.7 686 52.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 2.0e-153 547.0 686 52.5
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 2.6e-153 546.6 675 52.1
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 2.6e-153 546.6 697 49.9
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 5.9e-153 545.4 682 52.5
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 5.9e-153 545.4 678 50.4
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 5.9e-153 545.4 685 52.0
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.0e-152 544.7 690 52.3
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.3e-152 544.3 687 51.4
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 2.2e-152 543.5 685 50.8
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.9e-152 543.1 686 50.1
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.5e-151 540.8 688 49.7
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 2.5e-151 540.0 684 50.6
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.2e-151 539.7 688 49.9
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.2e-151 539.7 696 50.6
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.2e-151 538.5 688 49.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 9.4e-151 538.1 685 51.4
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 9.4e-151 538.1 687 51.2
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.2e-150 537.7 685 51.7
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.1e-150 537.0 680 50.3
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-150 537.0 686 51.9
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.7e-150 536.6 685 49.3
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.1e-150 535.4 684 52.3
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 1.0e-149 534.6 680 52.5
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.4e-149 534.3 677 49.9
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.4e-149 534.3 681 52.3
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.8e-149 533.9 680 50.1
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.3e-149 533.5 668 49.0
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 2.3e-149 533.5 678 49.7
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.6e-148 530.0 683 48.9
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 3.3e-148 529.6 673 49.6
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 9.7e-148 528.1 683 49.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.1e-146 524.6 668 48.5
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 5.3e-146 522.3 676 47.8
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 5.3e-146 522.3 676 47.8
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 5.3e-146 522.3 685 49.8
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 5.3e-146 522.3 685 49.8
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 4.5e-145 519.2 670 48.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 2.9e-144 516.5 683 51.5
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 3.8e-144 516.2 682 47.5
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 4.2e-143 512.7 684 51.3
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 5.5e-143 512.3 683 50.5
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 9.4e-143 511.5 696 51.0
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 9.4e-143 511.5 663 49.3
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.2e-142 511.1 689 49.3
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.6e-142 509.6 661 50.4
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 3.0e-141 506.5 674 51.3
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 5.2e-141 505.8 684 50.3
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 5.2e-141 505.8 670 47.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.4e-140 503.1 658 49.1
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 3.4e-140 503.1 683 49.6
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 4.4e-140 502.7 669 49.8
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 4.4e-140 502.7 666 49.7
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 5.7e-140 502.3 677 47.0
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 7.5e-140 501.9 684 50.4
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.3e-139 501.1 676 47.0
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.3e-139 501.1 686 47.8
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.7e-139 500.7 688 47.4
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.7e-139 499.6 684 50.3
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.1e-138 498.0 662 48.6
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.4e-138 497.7 683 49.6
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 2.4e-138 496.9 613 50.2
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 7.0e-138 495.4 680 48.4
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 9.1e-138 495.0 660 48.0
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.0e-137 493.8 679 49.0
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 3.5e-137 493.0 691 46.9
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 2.3e-136 490.3 672 47.8
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 2.9e-136 490.0 668 48.2
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.9e-136 490.0 686 47.2
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.5e-136 488.8 548 53.6
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.5e-136 488.8 548 53.6
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.1e-135 488.0 668 47.5
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.5e-135 487.6 675 48.4
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.5e-135 486.9 679 50.1
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 5.5e-135 485.7 684 47.1
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 7.2e-135 485.3 539 55.3
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 2.8e-134 483.4 675 49.5
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 4.7e-134 482.6 678 45.1
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 8.0e-134 481.9 670 48.5
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.2e-132 478.0 688 46.8
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 1.5e-132 477.6 666 47.0
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 2.6e-132 476.9 700 46.7
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.2e-131 473.8 670 47.5
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 3.7e-131 473.0 692 45.7
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.1e-130 471.5 673 46.5
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.8e-130 470.7 669 45.1
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.1e-130 469.9 678 45.6
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 4.1e-130 469.5 678 45.4
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 5.4e-130 469.2 684 45.9
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 5.4e-130 469.2 683 44.9
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.6e-129 467.6 687 48.2
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 5.9e-129 465.7 682 43.8
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.0e-128 464.9 675 46.1
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.9e-128 463.4 566 52.1
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 4.3e-127 459.5 684 45.2
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.3e-127 459.5 639 49.1
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 6.1e-126 455.7 668 45.7
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 3.0e-125 453.4 673 44.4
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.0e-125 453.0 535 52.3
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 4.0e-125 453.0 684 46.6
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.5e-124 448.7 681 47.7
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.4e-123 445.7 672 44.6
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.8e-122 444.1 679 43.9
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.4e-122 443.7 690 44.2
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 8.6e-120 435.3 677 41.8
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.0e-117 426.4 675 43.4
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 2.6e-116 423.7 626 44.4
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 3.0e-112 410.2 563 44.9
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 5.6e-111 406.0 673 41.0
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 2.1e-110 404.1 532 47.6
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.9e-106 391.0 672 42.7
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.2e-98 362.1 650 43.5
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.7e-91 341.3 607 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 8.4e-91 339.0 669 37.4
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.0e-88 332.0 597 38.9
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.7e-83 314.7 441 46.0
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 4.5e-76 290.0 673 36.4
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 9.9e-76 288.9 431 48.7
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 3.2e-74 283.9 423 48.0
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.1e-73 281.2 688 35.6
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 5.6e-71 273.1 549 42.3
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 3.4e-68 263.8 424 44.3
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.1e-63 248.8 537 37.1
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 7.4e-63 246.1 220 62.7
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 6.9e-61 239.6 308 46.8
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 3.4e-52 210.7 472 34.5
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 6.7e-48 196.4 641 34.8
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 1.2e-41 175.6 658 30.1
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 4.7e-41 173.7 269 40.1
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.7e-22 110.9 109 49.5
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.7e-22 110.9 112 48.2
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 7.7e-20 103.2 78 66.7
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 6.6e-19 100.1 151 47.0
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.0e-16 92.8 224 42.0
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.2e-15 89.4 83 57.8
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 9.2e-13 79.7 133 35.3
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 7.8e-12 76.6 77 57.1
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.3e-11 75.9 75 56.0
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.5e-10 71.6 83 44.6
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 8.0e-09 66.6 49 57.1
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 4.4e-07 60.8 386 23.6
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 9.8e-07 59.7 590 25.8


User provided reference genes

Program Settings