Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 4.5e-161 571.2 296 100.0
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 4.7e-110 401.7 321 69.5
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 3.1e-109 399.1 306 71.6
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 2.1e-105 386.3 305 70.5
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 2.2e-91 339.7 300 64.7
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 2.9e-91 339.3 306 64.4
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 2.9e-91 339.3 306 64.7
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 4.6e-89 332.0 215 77.7
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 6.0e-89 331.6 215 77.7
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 1.0e-88 330.9 301 64.5
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 1.1e-85 320.9 216 75.0
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 5.8e-84 315.1 215 77.2
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.1e-82 310.8 215 73.5
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 1.9e-82 310.1 216 72.2
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 5.4e-82 308.5 216 72.2
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 6.0e-81 305.1 215 72.6
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.0e-81 305.1 215 74.4
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.0e-80 304.3 215 73.0
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.3e-80 303.9 215 72.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 1.3e-80 303.9 224 70.1
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 2.3e-80 303.1 214 72.4
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 2.3e-80 303.1 215 71.2
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 3.0e-80 302.8 214 71.0
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 3.0e-80 302.8 220 70.5
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 3.9e-80 302.4 214 71.0
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 5.1e-80 302.0 215 69.8
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 5.1e-80 302.0 216 70.8
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 8.7e-80 301.2 215 70.2
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.1e-79 300.8 215 70.7
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 1.3e-78 297.4 215 69.8
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.6e-78 297.0 289 57.1
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 3.6e-78 295.8 214 69.2
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.4e-77 293.9 213 69.5
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.4e-77 293.9 218 67.9
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 2.4e-77 293.1 215 69.3
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 5.3e-77 292.0 301 55.5
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 9.0e-77 291.2 215 69.3
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 9.0e-77 291.2 216 67.6
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 2.6e-76 289.7 215 68.8
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 3.4e-76 289.3 270 59.3
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 3.4e-76 289.3 215 67.0
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 4.5e-76 288.9 215 66.5
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 7.6e-76 288.1 202 68.8
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 1.3e-75 287.3 217 66.4
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 4.9e-75 285.4 216 66.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.4e-75 285.0 207 68.6
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 8.4e-75 284.6 211 67.8
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 8.4e-75 284.6 215 67.0
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 1.1e-74 284.3 205 70.7
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 1.1e-74 284.3 216 65.7
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.1e-74 284.3 215 67.0
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.4e-74 283.9 216 65.7
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.4e-74 283.9 225 65.8
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 2.4e-74 283.1 223 65.5
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 3.2e-74 282.7 215 66.5
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 3.2e-74 282.7 211 67.8
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 4.2e-74 282.3 215 66.0
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 9.3e-74 281.2 202 68.3
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 1.6e-73 280.4 219 66.2
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.7e-73 279.6 215 67.9
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 2.7e-73 279.6 214 65.9
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 3.5e-73 279.3 215 67.9
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 6.0e-73 278.5 216 64.8
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 6.0e-73 278.5 213 65.7
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 7.9e-73 278.1 219 65.8
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 1.3e-72 277.3 216 65.7
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 5.1e-72 275.4 222 64.9
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 5.1e-72 275.4 215 64.7
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 6.7e-72 275.0 215 64.7
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 8.7e-72 274.6 218 66.1
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 8.7e-72 274.6 219 65.3
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.1e-71 274.2 219 65.8
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.1e-71 274.2 215 66.0
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.5e-71 273.9 205 65.4
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.9e-71 273.5 309 52.4
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 7.4e-71 271.6 218 66.1
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 7.4e-71 271.6 209 65.1
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 9.6e-71 271.2 217 66.8
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 9.6e-71 271.2 205 66.3
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.3e-70 270.8 203 67.5
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.6e-70 270.4 286 54.5
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 4.8e-70 268.9 217 67.3
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 6.2e-70 268.5 212 65.1
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 2.4e-69 266.5 212 64.6
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 3.1e-69 266.2 206 64.6
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 5.3e-69 265.4 207 65.7
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.2e-68 264.2 215 63.7
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 2.6e-68 263.1 201 66.2
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 4.5e-68 262.3 283 51.9
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 5.8e-68 261.9 223 62.3
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.0e-67 261.2 203 63.5
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.0e-67 261.2 213 64.3
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.7e-67 260.4 219 63.5
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.2e-67 260.0 269 53.9
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 3.8e-67 259.2 223 61.4
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 8.4e-67 258.1 269 53.9
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 3.3e-63 246.1 217 61.3
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.8e-62 243.0 223 57.0
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 6.3e-62 241.9 210 59.0
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 8.2e-62 241.5 224 61.6
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 1.7e-59 233.8 216 57.4
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 8.5e-59 231.5 194 61.3
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 8.5e-59 231.5 194 61.3
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 4.6e-57 225.7 217 56.7
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.8e-56 223.8 169 66.9
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 3.0e-56 223.0 201 58.2
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 6.7e-56 221.9 188 61.7
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.8e-53 213.8 210 54.3
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 6.9e-53 211.8 210 53.8
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 5.9e-52 208.8 210 54.8
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 1.7e-51 207.2 195 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 4.2e-50 202.6 194 54.6
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.5e-50 202.2 191 56.0
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.6e-49 200.7 193 57.0
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 1.5e-47 194.1 193 53.4
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 2.8e-46 189.9 195 51.3
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.5e-44 182.6 170 60.0
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 2.5e-42 176.8 161 60.2
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 2.8e-38 163.3 130 66.9
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 9.1e-37 158.3 139 60.4
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.2e-35 153.7 128 62.5
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 6.3e-30 135.6 209 40.2
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.1e-29 134.8 123 61.8
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 7.7e-28 128.6 194 38.7
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 1.0e-27 128.3 113 56.6
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 3.0e-24 116.7 190 31.6
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.5e-23 112.1 166 45.2
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 9.1e-21 105.1 65 78.5
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 1.7e-19 100.9 69 66.7
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.3e-14 82.0 87 52.9
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.7e-12 77.0 46 78.3
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 5.9e-12 75.9 48 72.9
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 1.6e-09 67.8 80 53.8
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 4.7e-09 66.2 78 52.6
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.0e-08 65.1 75 48.0
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.3e-06 58.2 48 56.2
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 1.3e-06 58.2 71 52.1
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 3.7e-06 56.6 56 55.4
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 3.7e-06 56.6 44 65.9


User provided reference genes

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