Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 0.0e+00 1418.3 765 100.0
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1206.4 1078 65.4
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1191.8 1065 65.0
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1173.7 1080 64.4
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1164.1 1065 62.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1130.5 1065 61.1
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 1.5e-301 1039.3 928 60.0
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 4.4e-301 1037.7 1003 56.7
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 1.3e-300 1036.2 985 59.0
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 3.7e-300 1034.6 997 56.6
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 8.3e-300 1033.5 1004 56.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 2.4e-299 1031.9 947 60.5
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 9.1e-299 1030.0 996 56.5
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 2.0e-298 1028.9 1004 56.0
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 3.8e-297 1024.6 1004 55.8
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 5.0e-297 1024.2 997 55.8
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.9e-296 1022.3 1004 55.0
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 4.2e-296 1021.1 1004 54.9
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 6.1e-295 1017.3 1004 55.0
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 8.0e-295 1016.9 1004 54.8
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 1.4e-294 1016.1 1006 55.6
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 2.3e-294 1015.4 1004 55.6
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 2.3e-294 1015.4 995 56.3
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 3.4e-293 1011.5 1004 55.0
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 6.3e-292 1007.3 1003 54.9
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 3.2e-291 1005.0 998 55.2
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 1.2e-290 1003.0 1083 52.3
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 1.6e-290 1002.7 997 55.6
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.3e-289 999.6 989 55.3
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 7.3e-288 993.8 1002 54.8
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 1.6e-287 992.6 998 53.9
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 3.1e-286 988.4 1004 53.4
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 4.0e-286 988.0 1040 53.8
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 5.2e-286 987.6 1004 53.8
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 1.5e-285 986.1 997 54.3
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 4.4e-285 984.6 997 53.9
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 9.8e-285 983.4 1003 53.5
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 9.8e-285 983.4 989 55.0
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 1.3e-284 983.0 998 53.3
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 1.7e-284 982.6 1004 53.7
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 4.1e-283 978.0 1001 53.5
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 5.4e-283 977.6 1002 53.1
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 4.6e-282 974.5 999 53.3
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 5.0e-281 971.1 997 53.1
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 8.6e-281 970.3 997 53.7
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 9.5e-280 966.8 997 52.6
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.2e-279 966.5 510 92.5
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 2.8e-279 965.3 997 53.4
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 1.8e-278 962.6 998 53.1
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 3.1e-278 961.8 1000 52.7
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 5.8e-277 957.6 1005 52.6
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.3e-276 956.4 1065 51.3
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 4.9e-276 954.5 998 52.7
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 3.9e-273 944.9 1017 51.5
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 8.6e-273 943.7 1026 52.0
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 1.9e-272 942.6 1011 52.5
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 1.8e-270 936.0 977 53.5
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 2.3e-270 935.6 977 53.4
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 2.3e-270 935.6 977 53.4
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 1.2e-269 933.3 978 53.6
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 5.8e-269 931.0 971 52.8
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 1.2e-266 923.3 948 54.3
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 6.6e-265 917.5 1040 49.8
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 9.6e-264 913.7 1005 50.8
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 3.6e-263 911.8 1058 49.5
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 2.6e-261 905.6 1022 50.1
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 2.9e-260 902.1 999 50.1
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 3.8e-260 901.7 562 80.2
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 3.8e-260 901.7 965 52.6
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 1.2e-258 896.7 1005 49.6
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 1.6e-258 896.3 998 50.0
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 3.0e-257 892.1 988 50.2
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 3.9e-257 891.7 997 51.5
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.8e-255 885.6 536 80.2
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 7.6e-253 877.5 1157 45.5
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 1.0e-249 867.1 934 52.7
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.1e-246 857.1 530 78.1
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 7.6e-245 850.9 1003 49.0
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 2.9e-244 849.0 1023 48.0
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 1.1e-243 847.0 561 75.0
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 1.6e-242 843.2 552 75.2
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 2.0e-237 826.2 1027 47.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 7.6e-237 824.3 978 47.8
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 2.3e-233 812.8 841 54.1
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 1.9e-232 809.7 1000 45.7
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.4e-230 803.5 424 91.7
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 7.6e-229 797.7 1000 44.8
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.1e-224 783.9 1119 44.2
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 3.3e-224 782.3 1008 44.2
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 1.1e-222 777.3 915 49.8
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 2.2e-212 743.0 868 49.3
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 2.6e-208 729.6 1001 41.9
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 1.3e-191 674.1 1005 41.4
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 2.0e-184 650.2 1013 39.9
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.5e-171 607.4 532 57.7
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 3.5e-165 586.3 532 55.3
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 2.6e-160 570.1 314 87.3
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.5e-155 554.3 549 56.1
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 9.9e-152 541.6 270 96.7
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 2.2e-127 460.7 751 38.3
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 3.2e-126 456.8 308 76.6
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.5e-123 447.2 241 88.4
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 6.2e-122 442.6 333 69.1
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.4e-113 414.8 452 53.5
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.3e-111 408.3 294 68.4
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.1e-105 385.6 276 72.5
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.3e-100 370.9 192 89.1
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 2.3e-84 317.8 300 50.0
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.7e-77 294.3 143 93.0
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 4.9e-66 256.9 276 52.5
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 9.5e-62 242.7 276 49.6
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 1.2e-61 242.3 276 49.6
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.2e-61 242.3 236 55.9
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.8e-61 241.1 289 48.4
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 6.1e-61 240.0 308 46.8
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 2.8e-53 214.5 142 73.2
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 2.2e-50 204.9 167 62.9
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 4.1e-49 200.7 107 86.9
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 8.9e-44 183.0 134 67.9
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 2.1e-40 171.8 104 82.7
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.8e-36 158.7 214 43.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 6.8e-36 156.8 147 53.7
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 1.2e-35 156.0 127 63.0
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.4e-35 154.5 169 50.3
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 4.4e-35 154.1 98 80.6
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 4.4e-35 154.1 105 71.4
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.6e-32 145.6 112 62.5
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 3.1e-28 131.3 90 67.8
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 1.6e-24 119.0 131 53.4
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.3e-21 109.4 55 90.9
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.3e-21 109.4 55 90.9
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 9.9e-19 99.8 73 68.5
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 1.4e-17 95.9 45 97.8
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 4.2e-17 94.4 55 89.1
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 7.1e-17 93.6 67 68.7
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 2.8e-13 81.6 109 46.8
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 3.1e-12 78.2 51 76.5
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 4.0e-12 77.8 44 86.4
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 4.0e-12 77.8 44 86.4
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 2.0e-11 75.5 44 84.1
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 2.6e-11 75.1 43 86.0
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 3.4e-11 74.7 47 80.9
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 3.4e-11 74.7 54 66.7
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 5.8e-11 73.9 44 81.8
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 3.5e-08 64.7 36 80.6
TPR.G2648 Trifolium pratense HOM05D004422 ORTHO05D413231 2.3e-07 62.0 31 90.3
TPR.G40130 Trifolium pratense HOM05D004422 ORTHO05D013213 5.1e-07 60.8 35 91.4
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 6.7e-07 60.5 29 86.2
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 7.4e-06 57.0 58 51.7


User provided reference genes

Program Settings