Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32487 Trifolium pratense HOM05D000212 ORTHO05D413094 1.3e-31 139.4 87 100.0
TPR.G33805 Trifolium pratense HOM05D000212 ORTHO05D000225 2.1e-21 105.5 57 89.5
TPR.G33848 Trifolium pratense HOM05D000212 ORTHO05D000225 3.9e-12 74.7 56 60.7
Psat1g011880 Pisum sativum HOM05D000212 ORTHO05D000225 1.9e-11 72.4 54 55.6
Ca_03567_v3 Cicer arietinum L. HOM05D000212 ORTHO05D000225 3.1e-09 65.1 57 50.9
Ca_03580_v3 Cicer arietinum L. HOM05D000212 ORTHO05D000225 1.2e-08 63.2 57 56.1
TPR.G33854 Trifolium pratense HOM05D000212 ORTHO05D000225 1.2e-08 63.2 57 57.9
Ca_03581_v3 Cicer arietinum L. HOM05D000212 ORTHO05D000225 2.6e-08 62.0 58 55.2
Ca_03561_v3 Cicer arietinum L. HOM05D000212 ORTHO05D000225 3.4e-08 61.6 58 51.7
CSS0006674 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D000225 4.4e-08 61.2 58 55.2
Medtr4g032450 Medicago truncatula HOM05D000212 ORTHO05D000225 7.6e-08 60.5 57 47.4
Medtr4g033455 Medicago truncatula HOM05D000212 ORTHO05D000225 7.6e-08 60.5 57 49.1
Psat1g026960 Pisum sativum HOM05D000212 ORTHO05D000225 9.9e-08 60.1 57 42.1
Psat7g243000 Pisum sativum HOM05D000212 ORTHO05D000225 9.9e-08 60.1 58 48.3
Medtr4g033460 Medicago truncatula HOM05D000212 ORTHO05D000225 1.7e-07 59.3 57 47.4
HanXRQChr10g0300801 Helianthus annuus HOM05D000212 ORTHO05D000225 2.9e-07 58.5 59 54.2
HanXRQChr10g0300851 Helianthus annuus HOM05D000212 ORTHO05D000225 2.9e-07 58.5 59 54.2
Hma1.2p1_0136F.1_g061970 Hydrangea macrophylla HOM05D000212 ORTHO05D000225 2.9e-07 58.5 56 55.4
PSO017G5471 Papaver somniferum HOM05D000212 ORTHO05D000225 2.9e-07 58.5 59 50.8
Peaxi162Scf00362g00541 Petunia axillaris HOM05D000212 ORTHO05D000225 2.9e-07 58.5 57 50.9
Psat1g011760 Pisum sativum HOM05D000212 ORTHO05D000225 2.9e-07 58.5 57 42.1
CARHR145510 Cardamine hirsuta HOM05D000212 ORTHO05D000225 4.9e-07 57.8 59 50.8
Ciclev10026642m.g Citrus clementina HOM05D000212 ORTHO05D000225 4.9e-07 57.8 58 51.7
Hma1.2p1_0136F.1_g061990 Hydrangea macrophylla HOM05D000212 ORTHO05D000225 4.9e-07 57.8 58 56.9
PSO017G1112 Papaver somniferum HOM05D000212 ORTHO05D000225 4.9e-07 57.8 58 50.0
PSO017G1588 Papaver somniferum HOM05D000212 ORTHO05D000225 4.9e-07 57.8 58 50.0
PSO837G0038 Papaver somniferum HOM05D000212 ORTHO05D000225 4.9e-07 57.8 59 50.8
Ah.01g023050 Amaranthus hybridus HOM05D000212 ORTHO05D000225 6.4e-07 57.4 58 53.4
Ah.02g123280 Amaranthus hybridus HOM05D000212 ORTHO05D000225 6.4e-07 57.4 57 45.6
Ca_03954_v3 Cicer arietinum L. HOM05D000212 ORTHO05D000225 6.4e-07 57.4 57 52.6
Ciclev10033809m.g Citrus clementina HOM05D000212 ORTHO05D000225 6.4e-07 57.4 56 46.4
Nitab4.5_0000283g0410 Nicotiana tabacum HOM05D000212 ORTHO05D000225 6.4e-07 57.4 59 52.5
Nitab4.5_0000369g0080 Nicotiana tabacum HOM05D000212 ORTHO05D000225 6.4e-07 57.4 59 52.5
Nitab4.5_0003914g0060 Nicotiana tabacum HOM05D000212 ORTHO05D000225 6.4e-07 57.4 59 52.5
PSO017G0254 Papaver somniferum HOM05D000212 ORTHO05D000225 6.4e-07 57.4 59 50.8
PSO349G0203 Papaver somniferum HOM05D000212 ORTHO05D000225 6.4e-07 57.4 59 50.8
PSO349G0222 Papaver somniferum HOM05D000212 ORTHO05D000225 6.4e-07 57.4 59 50.8
PSO675G8303 Papaver somniferum HOM05D000212 ORTHO05D000225 6.4e-07 57.4 59 50.8
Peaxi162Scf00078g01335 Petunia axillaris HOM05D000212 ORTHO05D000225 6.4e-07 57.4 59 52.5
Rhsim09G0148700 Rhododendron simsii HOM05D000212 ORTHO05D000225 6.4e-07 57.4 56 44.6
RhsimUnG0186000 Rhododendron simsii HOM05D000212 ORTHO05D000225 6.4e-07 57.4 56 44.6
CSS0006800 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D000225 8.4e-07 57.0 57 49.1
CSS0046469 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D000225 8.4e-07 57.0 57 49.1
Migut.B00073 Erythranthe guttata HOM05D000212 ORTHO05D000225 8.4e-07 57.0 56 46.4
Migut.B00076 Erythranthe guttata HOM05D000212 ORTHO05D000225 8.4e-07 57.0 56 51.8
MD10G1125000 Malus domestica HOM05D000212 ORTHO05D000225 8.4e-07 57.0 56 53.6
PSO316G0001 Papaver somniferum HOM05D000212 ORTHO05D000225 8.4e-07 57.0 59 50.8
PSO732G0821 Papaver somniferum HOM05D000212 ORTHO05D000225 8.4e-07 57.0 59 50.8
Psat1g191960 Pisum sativum HOM05D000212 ORTHO05D000225 8.4e-07 57.0 57 45.6
AT1G20140 Arabidopsis thaliana HOM05D000212 ORTHO05D000225 1.1e-06 56.6 58 53.4
Lj3g0004247 Lotus japonicus HOM05D000212 ORTHO05D000225 1.1e-06 56.6 58 55.2
vmacro07688 Vaccinium macrocarpon HOM05D000212 ORTHO05D000225 1.1e-06 56.6 59 52.5
MSTRG.19987 Avicennia marina HOM05D000212 ORTHO05D000225 1.4e-06 56.2 56 50.0
CSS0040580 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D000225 1.4e-06 56.2 59 52.5
ECA233G1489 Erigeron canadensis HOM05D000212 ORTHO05D000225 1.4e-06 56.2 59 50.8
Lsat_1_v5_gn_8_123241 Lactuca sativa HOM05D000212 ORTHO05D000225 1.4e-06 56.2 59 50.8
Medtr7g094280 Medicago truncatula HOM05D000212 ORTHO05D000225 1.4e-06 56.2 58 51.7
Nitab4.5_0002763g0010 Nicotiana tabacum HOM05D000212 ORTHO05D000225 1.4e-06 56.2 58 53.4
Nitab4.5_0002763g0040 Nicotiana tabacum HOM05D000212 ORTHO05D000225 1.4e-06 56.2 58 53.4
PSO837G0016 Papaver somniferum HOM05D000212 ORTHO05D000225 1.4e-06 56.2 59 50.8
Solyc11g042930.2 Solanum lycopersicum HOM05D000212 ORTHO05D000225 1.4e-06 56.2 59 50.8
Sopen11g019310 Solanum pennellii HOM05D000212 ORTHO05D000225 1.4e-06 56.2 59 50.8
vmacro17339 Vaccinium macrocarpon HOM05D000212 ORTHO05D000225 1.4e-06 56.2 59 52.5
Actinidia22949 Actinidia chinensis HOM05D000212 ORTHO05D000225 1.9e-06 55.8 57 47.4
Gohir.A01G002400 Gossypium hirsutum HOM05D000212 ORTHO05D000225 1.9e-06 55.8 59 45.8
HanXRQChr15g0494111 Helianthus annuus HOM05D000212 ORTHO05D000225 1.9e-06 55.8 58 48.3
Medtr4g032400 Medicago truncatula HOM05D000212 ORTHO05D000225 1.9e-06 55.8 58 48.3
Oeu053720.1 Olea europaea HOM05D000212 ORTHO05D000225 1.9e-06 55.8 56 48.2
Peaxi162Scf00042g02411 Petunia axillaris HOM05D000212 ORTHO05D000225 1.9e-06 55.8 56 48.2
QL11p050772 Quercus lobata HOM05D000212 ORTHO05D000225 1.9e-06 55.8 58 50.0
SGA_v2.0_scaffold292G47371 Striga asiatica HOM05D000212 ORTHO05D000225 1.9e-06 55.8 57 45.6
BcaB07g33715 Brassica carinata HOM05D000212 ORTHO05D000225 2.4e-06 55.5 59 50.8
DCAR_003173 Daucus carota HOM05D000212 ORTHO05D000225 2.4e-06 55.5 59 52.5
Dinv40125 Davidia involucrata HOM05D000212 ORTHO05D000225 2.4e-06 55.5 57 47.4
MD05G1122400 Malus domestica HOM05D000212 ORTHO05D000225 2.4e-06 55.5 58 50.0
Nitab4.5_0005236g0040 Nicotiana tabacum HOM05D000212 ORTHO05D000225 2.4e-06 55.5 58 51.7
QL06p051302 Quercus lobata HOM05D000212 ORTHO05D000225 2.4e-06 55.5 59 50.8
TPR.G34120 Trifolium pratense HOM05D000212 ORTHO05D000225 2.4e-06 55.5 57 50.9
TPR.G34126 Trifolium pratense HOM05D000212 ORTHO05D000225 2.4e-06 55.5 57 50.9
vmacro02279 Vaccinium macrocarpon HOM05D000212 ORTHO05D000225 2.4e-06 55.5 57 49.1
Aqoxy1G00116 Aquilegia oxysepala HOM05D000212 ORTHO05D000225 3.2e-06 55.1 57 45.6
Dinv41935 Davidia involucrata HOM05D000212 ORTHO05D000225 3.2e-06 55.1 59 50.8
HanXRQChr16g0515861 Helianthus annuus HOM05D000212 ORTHO05D000225 3.2e-06 55.1 58 51.7
Prupe.7G172700 Prunus persica HOM05D000212 ORTHO05D000225 3.2e-06 55.1 59 50.8
vmacro07686 Vaccinium macrocarpon HOM05D000212 ORTHO05D000225 3.2e-06 55.1 57 49.1
ATR0618G086 Amborella trichopoda HOM05D000212 ORTHO05D000225 4.2e-06 54.7 58 50.0
Aqoxy5G01139 Aquilegia oxysepala HOM05D000212 ORTHO05D000225 4.2e-06 54.7 57 45.6
BcaB02g08201 Brassica carinata HOM05D000212 ORTHO05D000225 4.2e-06 54.7 57 47.4
A06p04170 Brassica napus HOM05D000212 ORTHO05D000225 4.2e-06 54.7 57 47.4
CSS0020496 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D000225 4.2e-06 54.7 59 50.8
Migut.C00883 Erythranthe guttata HOM05D000212 ORTHO05D000225 4.2e-06 54.7 58 48.3
Gohir.D01G002000 Gossypium hirsutum HOM05D000212 ORTHO05D000225 4.2e-06 54.7 59 45.8
Lsat_1_v5_gn_4_71740 Lactuca sativa HOM05D000212 ORTHO05D000225 4.2e-06 54.7 59 49.2
Prupe.2G099500 Prunus persica HOM05D000212 ORTHO05D000225 4.2e-06 54.7 58 51.7
PGR042G1978 Punica granatum HOM05D000212 ORTHO05D000225 4.2e-06 54.7 56 46.4
Rhsim05G0055600 Rhododendron simsii HOM05D000212 ORTHO05D000225 4.2e-06 54.7 58 51.7
Rhsim05G0056100 Rhododendron simsii HOM05D000212 ORTHO05D000225 4.2e-06 54.7 58 51.7
Rhsim10G0207900 Rhododendron simsii HOM05D000212 ORTHO05D000225 4.2e-06 54.7 57 47.4
Rhsim10G0208200 Rhododendron simsii HOM05D000212 ORTHO05D000225 4.2e-06 54.7 57 47.4
RhsimUnG0045200 Rhododendron simsii HOM05D000212 ORTHO05D000225 4.2e-06 54.7 58 51.7
Sabra09G0105400 Salix brachista HOM05D000212 ORTHO05D000225 4.2e-06 54.7 59 50.8
Hund00019 Selenicereus undatus HOM05D000212 ORTHO05D000225 4.2e-06 54.7 58 48.3
SGA_v2.0_scaffold145G36076 Striga asiatica HOM05D000212 ORTHO05D000225 4.2e-06 54.7 57 43.9
vmacro22197 Vaccinium macrocarpon HOM05D000212 ORTHO05D000225 4.2e-06 54.7 57 47.4
Actinidia20515 Actinidia chinensis HOM05D000212 ORTHO05D000225 5.4e-06 54.3 57 47.4
MSTRG.16912 Avicennia marina HOM05D000212 ORTHO05D000225 5.4e-06 54.3 56 48.2
EL10Ac6g15161 Beta vulgaris HOM05D000212 ORTHO05D000225 5.4e-06 54.3 59 47.5
EL10Ac9g21374 Beta vulgaris HOM05D000212 ORTHO05D000225 5.4e-06 54.3 58 50.0
Cfa007010 Carpinus fangiana HOM05D000212 ORTHO05D000225 5.4e-06 54.3 59 49.2
Cc01_g01940 Coffea canephora HOM05D000212 ORTHO05D000225 5.4e-06 54.3 55 47.3
Haze_03719 Corylus avellana HOM05D000212 ORTHO05D000225 5.4e-06 54.3 59 49.2
Dinv31220 Davidia involucrata HOM05D000212 ORTHO05D000225 5.4e-06 54.3 55 47.3
Glyma.11G079600 Glycine max HOM05D000212 ORTHO05D000225 5.4e-06 54.3 59 49.2
Glyma.16G123700 Glycine max HOM05D000212 ORTHO05D000225 5.4e-06 54.3 59 49.2
HanXRQChr04g0112321 Helianthus annuus HOM05D000212 ORTHO05D000225 5.4e-06 54.3 59 49.2
Hma1.2p1_0163F.1_g072530 Hydrangea macrophylla HOM05D000212 ORTHO05D000225 5.4e-06 54.3 57 47.4
Oeu011050.1 Olea europaea HOM05D000212 ORTHO05D000225 5.4e-06 54.3 56 51.8
Oeu011053.1 Olea europaea HOM05D000212 ORTHO05D000225 5.4e-06 54.3 56 51.8
Oeu011054.1 Olea europaea HOM05D000212 ORTHO05D000225 5.4e-06 54.3 56 51.8
Os11g0456300 Oryza sativa ssp. japonica HOM05D000212 ORTHO05D000225 5.4e-06 54.3 58 51.7
Psat1g011720 Pisum sativum HOM05D000212 ORTHO05D000225 5.4e-06 54.3 58 50.0
Prupe.8G166100 Prunus persica HOM05D000212 ORTHO05D000225 5.4e-06 54.3 56 48.2
Rhsim11G0192400 Rhododendron simsii HOM05D000212 ORTHO05D000225 5.4e-06 54.3 57 47.4
TPR.G34156 Trifolium pratense HOM05D000212 ORTHO05D000225 5.4e-06 54.3 57 50.9
Zm00001eb169970 Zea mays HOM05D000212 ORTHO05D000225 5.4e-06 54.3 58 51.7
AT2G25700 Arabidopsis thaliana HOM05D000212 ORTHO05D000225 7.1e-06 53.9 58 51.7
Carub.0007s0583 Capsella rubella HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 45.8
CiPaw.08G127900 Carya illinoinensis HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 49.2
ClCG10G000540 Citrullus lanatus HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 49.2
DCAR_022815 Daucus carota HOM05D000212 ORTHO05D000225 7.1e-06 53.9 58 50.0
FvH4_1g11300 Fragaria vesca HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 49.2
FAN19G1463 Fragaria x ananassa HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 49.2
FAN23G2125 Fragaria x ananassa HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 49.2
FAN26G0437 Fragaria x ananassa HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 49.2
FAN28G1102 Fragaria x ananassa HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 49.2
HanXRQChr13g0417561 Helianthus annuus HOM05D000212 ORTHO05D000225 7.1e-06 53.9 56 46.4
HanXRQChr13g0417581 Helianthus annuus HOM05D000212 ORTHO05D000225 7.1e-06 53.9 56 46.4
HanXRQChr17g0570701 Helianthus annuus HOM05D000212 ORTHO05D000225 7.1e-06 53.9 58 50.0
Lalb_Chr16g0377421 Lupinus albus HOM05D000212 ORTHO05D000225 7.1e-06 53.9 57 45.6
Manes.02G108501 Manihot esculenta HOM05D000212 ORTHO05D000225 7.1e-06 53.9 57 45.6
Oeu007371.1 Olea europaea HOM05D000212 ORTHO05D000225 7.1e-06 53.9 58 46.6
Oeu007374.1 Olea europaea HOM05D000212 ORTHO05D000225 7.1e-06 53.9 58 46.6
Psat7g243120 Pisum sativum HOM05D000212 ORTHO05D000225 7.1e-06 53.9 58 46.6
Prupe.2G100400 Prunus persica HOM05D000212 ORTHO05D000225 7.1e-06 53.9 58 50.0
QL10p018806 Quercus lobata HOM05D000212 ORTHO05D000225 7.1e-06 53.9 56 46.4
RcHm_v2.0_Chr2g0098781 Rosa chinensis HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 49.2
Sabra05G0078400 Salix brachista HOM05D000212 ORTHO05D000225 7.1e-06 53.9 57 43.9
TPR.G34152 Trifolium pratense HOM05D000212 ORTHO05D000225 7.1e-06 53.9 57 49.1
TWI36G1356 Tripterygium wilfordii HOM05D000212 ORTHO05D000225 7.1e-06 53.9 59 50.8
Atru.chr9.844 Acer truncatum HOM05D000212 ORTHO05D000225 9.3e-06 53.5 59 44.1
Aqoxy4G00842 Aquilegia oxysepala HOM05D000212 ORTHO05D000225 9.3e-06 53.5 59 44.1
Dinv08564 Davidia involucrata HOM05D000212 ORTHO05D000225 9.3e-06 53.5 57 43.9
FvH4_5g22600 Fragaria vesca HOM05D000212 ORTHO05D000225 9.3e-06 53.5 58 48.3
FAN18G2433 Fragaria x ananassa HOM05D000212 ORTHO05D000225 9.3e-06 53.5 58 48.3
Glyma.02G045700 Glycine max HOM05D000212 ORTHO05D000225 9.3e-06 53.5 57 45.6
Gorai.002G002600 Gossypium raimondii HOM05D000212 ORTHO05D000225 9.3e-06 53.5 59 44.1
Hma1.2p1_0136F.1_g061980 Hydrangea macrophylla HOM05D000212 ORTHO05D000225 9.3e-06 53.5 58 53.4
Lalb_Chr09g0321561 Lupinus albus HOM05D000212 ORTHO05D000225 9.3e-06 53.5 58 50.0
Manes.04G124500 Manihot esculenta HOM05D000212 ORTHO05D000225 9.3e-06 53.5 57 43.9
Manes.04G129000 Manihot esculenta HOM05D000212 ORTHO05D000225 9.3e-06 53.5 57 43.9
Oeu013883.1 Olea europaea HOM05D000212 ORTHO05D000225 9.3e-06 53.5 57 45.6
PSO210G2475 Papaver somniferum HOM05D000212 ORTHO05D000225 9.3e-06 53.5 58 46.6
Psat7g243160 Pisum sativum HOM05D000212 ORTHO05D000225 9.3e-06 53.5 57 47.4
PGSC0003DMG400009581 Solanum tuberosum HOM05D000212 ORTHO05D000225 9.3e-06 53.5 57 50.9


User provided reference genes

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