Gene: AT1G20140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G20140
  • Transcript Identifier AT1G20140.1
  • Gene Type Coding gene
  • Location Chr1 : 6986430-6987079 : positive

Gene Family Information

  • ID HOM05D000212
  • #Genes/#Species 1878/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G20140.1
  • symbol SK4
  • Alias ASK4,SKP1-like 4
  • uniprot Q9LNT9

Descriptions

  • Description SKP1-like 4
  • Computational description SKP1-like 4 (SK4); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 3 (TAIR:AT2G25700.1); Has 1439 Blast hits to 1435 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 560; Fungi - 180; Plants - 528; Viruses - 11; Other Eukaryotes - 160 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IEA
GOA Databaseubiquitin-dependent protein catabolic process
GO:0006511
TAS
Gene Ontologyubiquitin-dependent protein catabolic process1
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:0031146
IBA
Gene OntologySCF-dependent proteasomal ubiquitin-dependent protein catabolic process2
GO:0016567
IEA
Gene Ontologyprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0097602
IBA
Gene Ontologycullin family protein binding2
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IDA
GOA Databasecytoplasm
GO:0005737
HDA
ISM, IBA
Gene Ontologycytoplasm2 4
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
HDA
IBA
Gene Ontologynucleus2 4
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus4
GO:0019005
ISS
Gene OntologySCF ubiquitin ligase complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036296 SKP1-like, dimerisation domain superfamily
IPR016072 SKP1 component, dimerisation
IPR011333 SKP1/BTB/POZ domain superfamily
IPR001232 S-phase kinase-associated protein 1-like
IPR016897 S-phase kinase-associated protein 1
IPR016073 SKP1 component, POZ domain
Mapman id Description
19.2.2.8.1.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.target protein binding component SKP1/ASK1