Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 0.0e+00 1568.9 785 100.0
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 0.0e+00 1341.6 785 85.2
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1087.8 826 69.0
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1083.9 829 69.1
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 3.2e-299 1031.6 817 67.2
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 2.7e-298 1028.5 816 66.7
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 8.8e-289 996.9 825 64.5
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 8.8e-281 970.3 832 62.3
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 8.5e-276 953.7 839 61.3
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.9e-275 952.6 841 62.1
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 1.0e-273 946.8 842 60.8
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.1e-270 936.8 715 69.5
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 7.3e-267 924.1 835 57.4
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 2.6e-264 915.6 795 60.8
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 1.3e-260 903.3 834 57.6
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 8.6e-260 900.6 835 57.0
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 8.6e-260 900.6 821 59.3
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 2.5e-259 899.0 873 55.1
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.2e-258 896.7 840 56.8
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 4.7e-258 894.8 834 57.3
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 4.7e-258 894.8 836 58.1
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.0e-257 893.6 836 58.0
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 5.2e-257 891.3 829 57.4
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.3e-255 886.7 831 56.0
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 8.3e-255 884.0 831 57.0
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.6e-253 879.8 844 55.3
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.1e-251 873.6 831 56.3
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.5e-251 873.2 823 55.7
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 2.1e-250 869.4 831 55.8
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.6e-250 868.6 836 55.9
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 8.9e-249 864.0 844 55.5
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 3.4e-248 862.1 836 55.0
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 3.4e-248 862.1 834 57.7
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 2.9e-247 859.0 834 54.8
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 2.9e-247 859.0 845 54.9
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 3.2e-246 855.5 836 54.5
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 7.1e-246 854.4 835 55.7
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 2.7e-245 852.4 807 57.1
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 3.5e-245 852.0 839 54.7
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 7.8e-245 850.9 846 55.1
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.3e-244 850.1 831 54.5
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 8.6e-244 847.4 838 54.2
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 1.9e-243 846.3 840 55.8
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-242 843.6 835 54.4
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.3e-241 839.3 839 54.6
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 4.0e-241 838.6 839 54.5
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 6.8e-241 837.8 839 53.5
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 2.0e-240 836.3 842 54.5
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.6e-240 835.9 839 54.4
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 2.2e-239 832.8 805 55.3
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.2e-239 832.8 839 54.1
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.3e-236 823.5 836 53.9
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 3.3e-235 818.9 842 52.6
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 3.3e-235 818.9 835 54.1
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.1e-234 816.2 812 55.4
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.2e-233 811.6 839 53.4
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 6.9e-233 811.2 825 53.6
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.5e-232 810.1 851 53.2
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.4e-232 808.5 849 52.9
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 5.8e-232 808.1 845 53.0
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 5.8e-232 808.1 838 52.3
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 7.6e-232 807.7 848 52.6
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 9.9e-232 807.4 807 53.3
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.9e-231 805.1 839 52.0
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 4.9e-231 805.1 827 53.0
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 6.4e-231 804.7 841 52.8
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.4e-230 803.5 830 53.6
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.2e-229 800.4 726 58.0
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.0e-228 797.3 838 51.9
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.3e-228 796.2 793 53.7
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.6e-228 794.7 840 52.9
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.3e-227 792.3 839 52.4
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 4.3e-227 792.0 807 53.4
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 9.6e-227 790.8 805 52.0
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 6.2e-226 788.1 836 51.9
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 8.1e-226 787.7 812 53.9
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.3e-225 785.0 851 51.4
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 6.9e-225 784.6 839 51.8
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 1.2e-224 783.9 856 51.6
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 2.6e-224 782.7 760 56.3
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 3.8e-223 778.9 889 50.3
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 4.9e-223 778.5 793 53.8
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 8.4e-223 777.7 836 50.8
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.4e-222 776.9 727 57.6
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 3.2e-222 775.8 777 54.7
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.4e-222 775.0 850 51.1
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 9.3e-222 774.2 838 51.1
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 4.6e-221 771.9 761 55.2
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.5e-219 766.1 833 51.1
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 9.6e-219 764.2 837 50.2
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 9.6e-219 764.2 839 50.9
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 3.6e-218 762.3 844 50.4
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 8.1e-218 761.1 879 49.4
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 8.1e-218 761.1 876 49.0
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-217 760.8 838 50.2
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-217 760.4 838 51.0
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.4e-217 760.4 838 51.0
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.8e-217 760.0 837 50.9
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 2.4e-217 759.6 838 50.2
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 3.1e-217 759.2 842 50.1
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 5.3e-217 758.4 825 51.3
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.5e-216 756.9 843 49.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.5e-216 756.9 836 50.8
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.5e-216 756.9 840 49.9
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 7.6e-216 754.6 836 50.4
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 7.6e-216 754.6 827 50.7
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 7.6e-216 754.6 836 50.7
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.2e-215 753.1 835 50.7
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.9e-215 752.7 835 50.7
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.9e-215 751.9 837 50.9
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 8.4e-215 751.1 837 50.5
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 8.4e-215 751.1 837 50.3
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.1e-214 750.7 836 50.1
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 2.4e-214 749.6 832 50.1
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 2.4e-214 749.6 832 50.5
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 3.2e-214 749.2 836 50.1
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 7.1e-214 748.0 831 50.2
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.6e-213 746.9 827 50.7
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 2.7e-213 746.1 865 49.5
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 7.9e-213 744.6 755 54.7
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 3.7e-210 735.7 784 52.0
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.8e-210 735.3 847 49.4
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 6.2e-210 734.9 831 50.1
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 8.2e-210 734.6 832 49.6
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 8.2e-210 734.6 816 50.4
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 4.0e-209 732.3 723 55.0
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 2.6e-208 729.6 811 49.3
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-206 723.8 813 50.3
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.9e-206 723.4 831 48.1
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.5e-206 723.0 819 50.3
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 9.3e-206 721.1 836 48.8
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 9.3e-206 721.1 813 50.8
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.8e-204 716.8 820 50.1
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 5.1e-204 715.3 836 49.2
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 9.6e-203 711.1 846 48.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.1e-202 709.9 825 49.3
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 8.2e-202 708.0 832 49.4
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.2e-200 704.1 627 58.9
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.5e-200 703.7 830 47.6
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 2.0e-200 703.4 751 50.5
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.3e-199 700.7 814 48.4
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 6.1e-197 691.8 815 47.4
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.0e-175 621.3 722 49.0
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 2.0e-144 517.3 870 37.9
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 4.3e-134 483.0 606 48.3
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.6e-131 473.8 906 34.9
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 5.8e-131 472.6 843 35.1
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 9.2e-129 465.3 424 57.5
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 7.3e-126 455.7 907 34.3
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 3.2e-113 413.7 888 33.6
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 2.1e-101 374.4 422 50.2
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 9.3e-97 359.0 444 47.7
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.1e-96 357.8 490 42.7
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 7.9e-88 329.3 654 35.0
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 8.5e-82 309.3 336 51.5
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.0e-75 288.1 311 51.1
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 5.5e-73 280.0 248 56.0
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.3e-63 248.1 680 28.4
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 1.1e-62 245.7 208 54.8
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 5.3e-60 236.9 253 48.2
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.2e-59 235.7 328 43.0
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 2.0e-59 235.0 278 48.6
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.2e-51 209.1 938 22.2
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 4.2e-41 174.1 155 60.0
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 8.3e-37 159.8 235 45.5
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.1e-36 157.5 189 41.8
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.0e-35 155.2 101 68.3
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.0e-30 138.7 195 41.5
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 7.5e-30 136.7 195 43.1
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.3e-29 136.0 117 63.2
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 2.9e-29 134.8 187 46.0
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.4e-28 132.5 123 53.7
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.6e-27 129.0 529 24.8
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.1e-24 118.6 626 22.7
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 3.6e-24 117.9 116 51.7
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 6.2e-24 117.1 425 27.1
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 9.2e-20 103.2 113 49.6
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 3.9e-18 97.8 84 59.5
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.9e-10 71.2 104 37.5
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.9e-10 71.2 104 37.5
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.9e-10 71.2 104 36.5
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.6e-10 70.1 104 37.5
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.1e-08 65.5 89 38.2
HPP92_021206 Vanilla planifolia HOM05D006479 ORTHO05D008310 2.6e-06 58.5 155 25.2
CDE02G1192 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 7.6e-06 57.0 141 27.7
TAR633G1538 Trochodendron aralioides HOM05D006479 ORTHO05D008310 7.6e-06 57.0 140 27.9


User provided reference genes

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