Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31559 Trifolium pratense HOM05D000268 ORTHO05D004469 4.3e-268 927.5 515 100.0
Medtr4g132610 Medicago truncatula HOM05D000268 ORTHO05D004469 5.9e-100 369.0 295 63.7
Medtr8g078490 Medicago truncatula HOM05D000268 ORTHO05D004469 8.3e-94 348.6 290 62.1
Glyma.16G143100 Glycine max HOM05D000268 ORTHO05D004469 1.8e-85 320.9 273 58.2
Glyma.02G060500 Glycine max HOM05D000268 ORTHO05D004469 2.4e-85 320.5 273 58.2
Lj2g0022074 Lotus japonicus HOM05D000268 ORTHO05D004469 3.3e-82 310.1 276 55.8
Haze_15153 Corylus avellana HOM05D000268 ORTHO05D004469 9.5e-82 308.5 306 51.3
Manes.13G134300 Manihot esculenta HOM05D000268 ORTHO05D004469 9.5e-82 308.5 310 50.6
QL06p044462 Quercus lobata HOM05D000268 ORTHO05D004469 2.1e-81 307.4 271 55.0
Lalb_Chr05g0227191 Lupinus albus HOM05D000268 ORTHO05D004469 2.8e-81 307.0 273 56.4
Ciclev10024695m.g Citrus clementina HOM05D000268 ORTHO05D004469 3.6e-81 306.6 323 50.5
Psat4g090200 Pisum sativum HOM05D000268 ORTHO05D004469 4.7e-81 306.2 265 57.7
Thecc.01G044200 Theobroma cacao HOM05D000268 ORTHO05D004469 5.2e-80 302.8 325 51.1
CiPaw.02G013900 Carya illinoinensis HOM05D000268 ORTHO05D004469 8.9e-80 302.0 319 49.2
Glyma.11G062100 Glycine max HOM05D000268 ORTHO05D004469 1.5e-79 301.2 311 51.8
Duzib264G0212 Durio zibethinus HOM05D000268 ORTHO05D004469 4.4e-79 299.7 352 47.4
Glyma.01G180100 Glycine max HOM05D000268 ORTHO05D004469 5.7e-79 299.3 399 43.1
Lalb_Chr05g0213051 Lupinus albus HOM05D000268 ORTHO05D004469 7.5e-79 298.9 271 55.0
FvH4_1g14350 Fragaria vesca HOM05D000268 ORTHO05D004469 2.2e-78 297.4 311 51.4
FAN19G2782 Fragaria x ananassa HOM05D000268 ORTHO05D004469 2.2e-78 297.4 311 51.4
CiPaw.01G030400 Carya illinoinensis HOM05D000268 ORTHO05D004469 8.3e-78 295.4 287 51.9
FAN28G1810 Fragaria x ananassa HOM05D000268 ORTHO05D004469 8.3e-78 295.4 311 51.4
Prupe.7G146600 Prunus persica HOM05D000268 ORTHO05D004469 8.3e-78 295.4 318 50.0
Ca_24816_v3 Cicer arietinum L. HOM05D000268 ORTHO05D004469 1.8e-77 294.3 271 54.6
arahy.Tifrunner.gnm1.ann1.ISY5ET Arachis hypogaea HOM05D000268 ORTHO05D004469 4.1e-77 293.1 303 52.1
MD15G1271600 Malus domestica HOM05D000268 ORTHO05D004469 7.0e-77 292.4 319 49.8
arahy.Tifrunner.gnm1.ann1.GI7SC3 Arachis hypogaea HOM05D000268 ORTHO05D004469 9.2e-77 292.0 289 52.9
arahy.Tifrunner.gnm1.ann1.259MTB Arachis hypogaea HOM05D000268 ORTHO05D004469 1.2e-76 291.6 289 53.3
CANSAT01G2579 Cannabis sativa HOM05D000268 ORTHO05D004469 1.2e-76 291.6 324 48.5
TWI73G0223 Tripterygium wilfordii HOM05D000268 ORTHO05D004469 1.2e-76 291.6 302 49.7
Medtr5g018850 Medicago truncatula HOM05D000268 ORTHO05D004469 1.6e-76 291.2 273 54.2
GSVIVG01019046001 Vitis vinifera HOM05D000268 ORTHO05D004469 1.6e-76 291.2 302 50.0
Gohir.A02G162200 Gossypium hirsutum HOM05D000268 ORTHO05D004469 2.0e-76 290.8 322 48.8
FAN23G1146 Fragaria x ananassa HOM05D000268 ORTHO05D004469 2.7e-76 290.4 311 50.8
Gorai.003G018700 Gossypium raimondii HOM05D000268 ORTHO05D004469 3.5e-76 290.0 322 48.4
Dinv39934 Davidia involucrata HOM05D000268 ORTHO05D004469 4.5e-76 289.7 290 50.3
RcHm_v2.0_Chr2g0103021 Rosa chinensis HOM05D000268 ORTHO05D004469 5.9e-76 289.3 311 51.1
Phvul.002G024600 Phaseolus vulgaris HOM05D000268 ORTHO05D004469 1.0e-75 288.5 276 52.9
Gohir.D03G018200 Gossypium hirsutum HOM05D000268 ORTHO05D004469 1.7e-75 287.7 322 48.1
VMungo1215G1516 Vigna mungo HOM05D000268 ORTHO05D004469 2.9e-75 287.0 276 52.9
Atru.chr3.486 Acer truncatum HOM05D000268 ORTHO05D004469 3.9e-75 286.6 265 55.5
Potri.005G129800 Populus trichocarpa HOM05D000268 ORTHO05D004469 5.0e-75 286.2 317 47.6
FAN26G3224 Fragaria x ananassa HOM05D000268 ORTHO05D004469 6.6e-75 285.8 325 49.2
MD02G1157000 Malus domestica HOM05D000268 ORTHO05D004469 6.6e-75 285.8 319 48.6
Potri.007G033000 Populus trichocarpa HOM05D000268 ORTHO05D004469 1.9e-74 284.3 303 48.2
Nn1g05132 Nelumbo nucifera HOM05D000268 ORTHO05D004469 5.6e-74 282.7 272 50.4
Gohir.A02G162100 Gossypium hirsutum HOM05D000268 ORTHO05D004469 9.5e-74 282.0 282 48.9
Gorai.003G018800 Gossypium raimondii HOM05D000268 ORTHO05D004469 2.1e-73 280.8 273 49.1
Psat2g163120 Pisum sativum HOM05D000268 ORTHO05D004469 8.0e-73 278.9 273 53.1
Lj3g0021520 Lotus japonicus HOM05D000268 ORTHO05D004469 1.4e-72 278.1 393 42.5
Sabra07G0028900 Salix brachista HOM05D000268 ORTHO05D004469 2.3e-72 277.3 303 47.5
vmacro05281 Vaccinium macrocarpon HOM05D000268 ORTHO05D004469 5.2e-72 276.2 271 49.8
CSS0018552 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D004469 6.8e-72 275.8 286 49.0
CSS0040273 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D004469 5.8e-71 272.7 294 48.0
TAR625G1531 Trochodendron aralioides HOM05D000268 ORTHO05D004469 5.8e-71 272.7 301 46.2
CsaV3_6G042640 Cucumis sativus L. HOM05D000268 ORTHO05D004469 3.7e-70 270.0 270 49.6
ClCG01G016320 Citrullus lanatus HOM05D000268 ORTHO05D004469 2.4e-69 267.3 271 48.7
MELO3C007503.2 Cucumis melo HOM05D000268 ORTHO05D004469 2.4e-69 267.3 271 48.7
Oeu027318.1 Olea europaea HOM05D000268 ORTHO05D004469 4.1e-69 266.5 297 45.8
Actinidia12097 Actinidia chinensis HOM05D000268 ORTHO05D004469 9.2e-69 265.4 284 47.9
DCAR_010955 Daucus carota HOM05D000268 ORTHO05D004469 1.2e-68 265.0 271 48.0
Oeu027319.1 Olea europaea HOM05D000268 ORTHO05D004469 1.2e-68 265.0 332 43.4
Rhsim10G0122500 Rhododendron simsii HOM05D000268 ORTHO05D004469 1.2e-68 265.0 271 48.7
PGR102G2765 Punica granatum HOM05D000268 ORTHO05D004469 7.8e-68 262.3 272 48.5
MSTRG.23812 Avicennia marina HOM05D000268 ORTHO05D004469 1.0e-67 261.9 303 45.5
Aqoxy5G01732 Aquilegia oxysepala HOM05D000268 ORTHO05D004469 1.3e-67 261.5 271 48.3
Lj4g0026497 Lotus japonicus HOM05D000268 ORTHO05D004469 1.7e-67 261.2 385 40.0
Sp4g02670 Schrenkiella parvula HOM05D000268 ORTHO05D004469 1.7e-67 261.2 298 45.3
TPR.G29867 Trifolium pratense HOM05D000268 ORTHO05D004469 1.7e-67 261.2 280 48.9
BcaB06g27931 Brassica carinata HOM05D000268 ORTHO05D004469 2.3e-67 260.8 301 44.9
A04p18100 Brassica napus HOM05D000268 ORTHO05D004469 2.3e-67 260.8 299 45.2
BcaC02g08548 Brassica carinata HOM05D000268 ORTHO05D004469 6.6e-67 259.2 297 44.4
C04p53050 Brassica napus HOM05D000268 ORTHO05D004469 6.6e-67 259.2 297 44.4
BolC4t26866H Brassica oleracea HOM05D000268 ORTHO05D004469 6.6e-67 259.2 297 44.4
Migut.H00513 Erythranthe guttata HOM05D000268 ORTHO05D004469 1.1e-66 258.5 272 48.5
Actinidia36535 Actinidia chinensis HOM05D000268 ORTHO05D004469 1.9e-66 257.7 273 47.3
BraA04t17428Z Brassica rapa HOM05D000268 ORTHO05D004469 1.9e-66 257.7 299 44.5
Thhalv10000012m.g Eutrema salsugineum HOM05D000268 ORTHO05D004469 1.9e-66 257.7 282 45.0
SalBow1G1781 Salvia bowleyana HOM05D000268 ORTHO05D004469 7.3e-66 255.8 271 49.4
THA.LOC104807561 Tarenaya hassleriana HOM05D000268 ORTHO05D004469 9.5e-66 255.4 274 46.7
Ah.02g126300 Amaranthus hybridus HOM05D000268 ORTHO05D004469 2.8e-65 253.8 276 46.0
ECA232G0911 Erigeron canadensis HOM05D000268 ORTHO05D004469 3.6e-65 253.4 284 44.0
Aa31LG7G13140 Aethionema arabicum HOM05D000268 ORTHO05D004469 6.2e-65 252.7 278 45.7
Hund14126 Selenicereus undatus HOM05D000268 ORTHO05D004469 1.4e-64 251.5 287 44.9
Sc03g0001070 Simmondsia chinensis HOM05D000268 ORTHO05D004469 2.3e-64 250.8 277 46.9
EL10Ac6g14864 Beta vulgaris HOM05D000268 ORTHO05D004469 3.1e-64 250.4 292 44.9
PSO170G1741 Papaver somniferum HOM05D000268 ORTHO05D004469 8.9e-64 248.8 268 44.8
SGA_v2.0_scaffold15G07183 Striga asiatica HOM05D000268 ORTHO05D004469 8.9e-64 248.8 280 45.7
ATR0733G136 Amborella trichopoda HOM05D000268 ORTHO05D004469 1.5e-63 248.1 282 43.3
AT2G23740 Arabidopsis thaliana HOM05D000268 ORTHO05D004469 2.0e-63 247.7 282 45.0
PSO700G0125 Papaver somniferum HOM05D000268 ORTHO05D004469 3.4e-63 246.9 268 44.8
AL4G13740 Arabidopsis lyrata HOM05D000268 ORTHO05D004469 1.7e-62 244.6 282 44.0
AUR62008036 Chenopodium quinoa HOM05D000268 ORTHO05D004469 2.2e-62 244.2 307 42.7
Lj4g0005897 Lotus japonicus HOM05D000268 ORTHO05D004469 2.2e-62 244.2 214 55.6
arahy.Tifrunner.gnm1.ann1.12AQES Arachis hypogaea HOM05D000268 ORTHO05D004469 2.9e-62 243.8 377 40.6
Lsat_1_v5_gn_4_176280 Lactuca sativa HOM05D000268 ORTHO05D004469 6.4e-62 242.7 270 45.2
HanXRQChr09g0265141 Helianthus annuus HOM05D000268 ORTHO05D004469 1.1e-61 241.9 288 40.3
unitig_736.g22253 Utricularia gibba HOM05D000268 ORTHO05D004469 1.9e-61 241.1 303 42.9
AUR62003214 Chenopodium quinoa HOM05D000268 ORTHO05D004469 3.2e-61 240.4 307 42.0
Sopen02g034660 Solanum pennellii HOM05D000268 ORTHO05D004469 1.6e-60 238.0 273 44.3
Nitab4.5_0000483g0060 Nicotiana tabacum HOM05D000268 ORTHO05D004469 6.0e-60 236.1 275 44.4
Peaxi162Scf00535g00417 Petunia axillaris HOM05D000268 ORTHO05D004469 6.0e-60 236.1 302 41.7
Solyc02g089970.3 Solanum lycopersicum HOM05D000268 ORTHO05D004469 1.7e-59 234.6 273 43.6
Carub.0004s0292 Capsella rubella HOM05D000268 ORTHO05D004469 3.0e-59 233.8 298 41.9
MBI16_g10970_MAGBIO Magnolia biondii HOM05D000268 ORTHO05D004469 3.0e-59 233.8 290 42.8
TAR381G1430 Trochodendron aralioides HOM05D000268 ORTHO05D004469 3.0e-59 233.8 226 50.4
Ca_22239_v3 Cicer arietinum L. HOM05D000268 ORTHO05D004469 3.9e-59 233.4 285 47.4
CARHR114610 Cardamine hirsuta HOM05D000268 ORTHO05D004469 3.6e-57 226.9 272 42.6
CAN.G836.12 Capsicum annuum HOM05D000268 ORTHO05D004469 2.6e-55 220.7 274 41.6
Sabra05G0105100 Salix brachista HOM05D000268 ORTHO05D004469 2.6e-55 220.7 212 52.4
unitig_899.g15136 Utricularia gibba HOM05D000268 ORTHO05D004469 2.4e-53 214.2 286 39.2
Zm00001eb188560 Zea mays HOM05D000268 ORTHO05D004469 3.9e-51 206.8 304 38.2
HPP92_007810 Vanilla planifolia HOM05D000268 ORTHO05D004469 8.6e-51 205.7 302 38.4
COL.COLO4_22162 Corchorus olitorius HOM05D000268 ORTHO05D004469 1.9e-50 204.5 204 52.0
SEGI_11374 Sequoiadendron giganteum HOM05D000268 ORTHO05D004469 3.6e-49 200.3 273 36.3
Gohir.D03G018350 Gossypium hirsutum HOM05D000268 ORTHO05D004469 2.8e-41 174.1 163 52.8
Mapoly0003s0206 Marchantia polymorpha HOM05D000268 ORTHO05D004469 4.8e-41 173.3 230 37.0
Actinidia04606 Actinidia chinensis HOM05D000268 ORTHO05D004469 1.1e-40 172.2 150 53.3
Duzib187G0333 Durio zibethinus HOM05D000268 ORTHO05D004469 9.0e-40 169.1 175 49.1
Zm00001eb252300 Zea mays HOM05D000268 ORTHO05D004469 9.0e-40 169.1 227 39.6
Nitab4.5_0004932g0040 Nicotiana tabacum HOM05D000268 ORTHO05D004469 5.8e-39 166.4 190 44.2
Lj4g0020969 Lotus japonicus HOM05D000268 ORTHO05D004469 7.1e-37 159.5 151 51.0
Lj7C14G2 Lonicera japonica HOM05D000268 ORTHO05D004469 2.8e-33 147.5 158 45.6
Os02g0708500 Oryza sativa ssp. japonica HOM05D000268 ORTHO05D004469 1.8e-32 144.8 221 37.6
AagrBONN_evm.TU.Sc2ySwM_368.772 Anthoceros agrestis HOM05D000268 ORTHO05D004469 1.4e-29 135.2 232 34.1
Pp3c22_17280 Physcomitrium patens HOM05D000268 ORTHO05D004469 2.5e-26 124.4 245 31.4
Sed0027730 Sechium edule HOM05D000268 ORTHO05D004469 2.5e-26 124.4 149 41.6
SEGI_19185 Sequoiadendron giganteum HOM05D000268 ORTHO05D004469 7.4e-26 122.9 174 35.6
SHI08705 Sapria himalayana HOM05D000268 ORTHO05D004469 1.2e-23 115.5 115 47.8
TPR.G31552 Trifolium pratense HOM05D000268 ORTHO05D004469 9.3e-21 105.9 111 53.2
CDE09G1072 Ceratophyllum demersum HOM05D000268 ORTHO05D043896 1.5e-18 98.6 120 42.5
CDE09G0193 Ceratophyllum demersum HOM05D000268 ORTHO05D004469 2.4e-16 91.3 177 30.5
Gohir.D03G018300 Gossypium hirsutum HOM05D000268 ORTHO05D004469 4.1e-16 90.5 122 37.7
SMO304G0138 Selaginella moellendorffii HOM05D000268 ORTHO05D004469 1.2e-15 89.0 145 32.4
Psat5g102560 Pisum sativum HOM05D000268 ORTHO05D004469 1.3e-14 85.5 66 60.6
Cpa.g.sc15.107 Carica papaya HOM05D000268 ORTHO05D004469 2.9e-14 84.3 89 49.4
Medtr8g078700 Medicago truncatula HOM05D000268 ORTHO05D004469 3.0e-11 74.3 127 78.7
Medtr8g078505 Medicago truncatula HOM05D000268 ORTHO05D004469 1.5e-10 72.0 117 36.8
Cpa.g.sc6035.1 Carica papaya HOM05D000268 ORTHO05D004469 4.8e-09 67.0 52 57.7
CDE09G0016 Ceratophyllum demersum HOM05D000268 ORTHO05D004469 1.3e-06 58.9 40 67.5
Medtr4g132670 Medicago truncatula HOM05D000268 ORTHO05D004469 1.3e-06 58.9 71 42.3
SHI08704 Sapria himalayana HOM05D000268 ORTHO05D004469 2.2e-06 58.2 83 42.2


User provided reference genes

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