Gene: AT2G23740

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G23740
  • Transcript Identifier AT2G23740.3
  • Gene Type Coding gene
  • Location Chr2 : 10098213-10103229 : positive

Gene Family Information

  • ID HOM05D000268
  • #Genes/#Species 1624/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G23740.3
  • symbol SUVR5
  • full_name SU(VAR)3-9-RELATED protein 5
  • uniprot O64827

Descriptions

  • Description histone-lysine N-methyltransferase SUVR5
  • Computational description nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin modification; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), SET domain (InterPro:IPR001214), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Post-SET domain (InterPro:IPR003616), Pre-SET domain (InterPro:IPR007728), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 5 (TAIR:AT2G35160.1); Has 5962 Blast hits to 5734 proteins in 461 species: Archae - 0; Bacteria - 386; Metazoa - 2995; Fungi - 515; Plants - 1025; Viruses - 0; Other Eukaryotes - 1041 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034968
IDA
IEA
Gene Ontologyhistone lysine methylation1
GO:0034968
IEA
InterProhistone lysine methylation
GO:0032259
IEA
GOA Databasemethylation
GO:0006325
IEA
GOA Databasechromatin organization
GO:1900109
IMP
Gene Ontologyregulation of histone H3-K9 dimethylation2
GO:0006342
IMP
Gene Ontologychromatin silencing2
GO:0006338
IDA
Gene Ontologychromatin remodeling2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0018024
IDA
IEA
Gene Ontologyhistone-lysine N-methyltransferase activity1
GO:0018024
IEA
InterProhistone-lysine N-methyltransferase activity
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0043565
IDA
Gene Ontologysequence-specific DNA binding2
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus
GO:0005694
IEA
GOA Databasechromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007728 Pre-SET domain
IPR040689 SUVR5, C2H2-type Zinc finger, 3 repeats
IPR001214 SET domain
IPR003616 Post-SET domain
IPR013087 Zinc finger C2H2-type
Mapman id Description
12.3.3.6 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-V histone methyltransferase (Suvar)