Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31472 Trifolium pratense HOM05D000621 ORTHO05D000421 2.6e-45 184.9 84 100.0
Medtr2g033390 Medicago truncatula HOM05D000621 ORTHO05D000421 7.8e-18 93.6 68 66.2
Lalb_Chr15g0089071 Lupinus albus HOM05D000621 ORTHO05D000421 1.3e-17 92.8 73 56.2
Ca_00956_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 8.6e-17 90.1 75 56.0
Lj6g0000808 Lotus japonicus HOM05D000621 ORTHO05D000421 1.1e-14 83.2 75 52.0
QL06p013123 Quercus lobata HOM05D000621 ORTHO05D000421 1.8e-14 82.4 73 47.9
arahy.Tifrunner.gnm1.ann1.MEP28M Arachis hypogaea HOM05D000621 ORTHO05D000421 2.6e-13 78.6 64 56.2
arahy.Tifrunner.gnm1.ann1.YAHF4W Arachis hypogaea HOM05D000621 ORTHO05D000421 2.6e-13 78.6 64 56.2
Migut.G00029 Erythranthe guttata HOM05D000621 ORTHO05D000421 5.8e-13 77.4 75 50.7
Migut.G00032 Erythranthe guttata HOM05D000621 ORTHO05D000421 5.8e-13 77.4 75 50.7
Manes.03G208100 Manihot esculenta HOM05D000621 ORTHO05D000421 1.7e-12 75.9 74 50.0
QL09p026609 Quercus lobata HOM05D000621 ORTHO05D000421 1.7e-12 75.9 71 45.1
Rhsim04G0242700 Rhododendron simsii HOM05D000621 ORTHO05D000421 8.4e-12 73.6 71 49.3
DCAR_026976 Daucus carota HOM05D000621 ORTHO05D000421 1.1e-11 73.2 72 41.7
MD16G1148900 Malus domestica HOM05D000621 ORTHO05D000421 1.4e-11 72.8 69 55.1
RcHm_v2.0_Chr4g0426121 Rosa chinensis HOM05D000621 ORTHO05D000421 1.4e-11 72.8 72 45.8
EL10Ac3g05555 Beta vulgaris HOM05D000621 ORTHO05D000421 3.2e-11 71.6 66 48.5
Lj3A834G67 Lonicera japonica HOM05D000621 ORTHO05D000421 3.2e-11 71.6 74 47.3
Peaxi162Scf00228g00737 Petunia axillaris HOM05D000621 ORTHO05D000421 3.2e-11 71.6 68 48.5
Nitab4.5_0003135g0030 Nicotiana tabacum HOM05D000621 ORTHO05D000421 7.1e-11 70.5 71 43.7
Solyc01g058160.3 Solanum lycopersicum HOM05D000621 ORTHO05D000421 7.1e-11 70.5 71 46.5
Haze_22238 Corylus avellana HOM05D000621 ORTHO05D000421 9.2e-11 70.1 71 42.3
Haze_22242 Corylus avellana HOM05D000621 ORTHO05D000421 9.2e-11 70.1 71 42.3
Rhsim02G0002100 Rhododendron simsii HOM05D000621 ORTHO05D000421 9.2e-11 70.1 71 42.3
FAN07G2593 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.2e-10 69.7 68 47.1
Prupe.2G323100 Prunus persica HOM05D000621 ORTHO05D000421 1.2e-10 69.7 75 42.7
PGR004G2743 Punica granatum HOM05D000621 ORTHO05D000421 1.2e-10 69.7 70 45.7
FAN12G0779 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.6e-10 69.3 68 45.6
Sopen01g023650 Solanum pennellii HOM05D000621 ORTHO05D000421 1.6e-10 69.3 71 46.5
PGSC0003DMG400015969 Solanum tuberosum HOM05D000621 ORTHO05D000421 1.6e-10 69.3 71 42.3
CAN.G1033.3 Capsicum annuum HOM05D000621 ORTHO05D000421 2.1e-10 68.9 68 48.5
CiPaw.07G182000 Carya illinoinensis HOM05D000621 ORTHO05D000421 2.7e-10 68.6 71 39.4
Eucgr.H04076 Eucalyptus grandis HOM05D000621 ORTHO05D000421 2.7e-10 68.6 71 43.7
FvH4_4g20700 Fragaria vesca HOM05D000621 ORTHO05D000421 2.7e-10 68.6 68 45.6
vmacro01581 Vaccinium macrocarpon HOM05D000621 ORTHO05D000421 3.5e-10 68.2 70 42.9
AUR62016247 Chenopodium quinoa HOM05D000621 ORTHO05D000421 4.6e-10 67.8 71 45.1
CSS0003716 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 6.0e-10 67.4 72 47.2
CSS0046820 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 6.0e-10 67.4 72 47.2
THA.LOC104802712 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 6.0e-10 67.4 68 45.6
vmacro07971 Vaccinium macrocarpon HOM05D000621 ORTHO05D000421 6.0e-10 67.4 70 45.7
Ah.07g201640 Amaranthus hybridus HOM05D000621 ORTHO05D000421 7.8e-10 67.0 63 44.4
FAN03G0157 Fragaria x ananassa HOM05D000621 ORTHO05D000421 7.8e-10 67.0 73 41.1
FAN10G3491 Fragaria x ananassa HOM05D000092 ORTHO05D000042 7.8e-10 67.0 73 41.1
Cc03_g11460 Coffea canephora HOM05D000621 ORTHO05D000421 1.0e-09 66.6 66 47.0
Oeu053731.1 Olea europaea HOM05D000621 ORTHO05D000421 1.0e-09 66.6 71 42.3
Actinidia13344 Actinidia chinensis HOM05D000621 ORTHO05D000421 1.3e-09 66.2 71 46.5
Gohir.D13G182700 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.3e-09 66.2 73 45.2
Gorai.013G208100 Gossypium raimondii HOM05D000621 ORTHO05D000421 1.3e-09 66.2 73 45.2
SGA_v2.0_scaffold64G22092 Striga asiatica HOM05D000621 ORTHO05D000421 1.3e-09 66.2 72 45.8
SGA_v2.0_scaffold5G02898 Striga asiatica HOM05D000621 ORTHO05D000421 1.7e-09 65.9 63 50.8
Prupe.1G112600 Prunus persica HOM05D000621 ORTHO05D000421 2.3e-09 65.5 68 50.0
unitig_899.g15628 Utricularia gibba HOM05D000621 ORTHO05D000421 2.3e-09 65.5 65 47.7
Duzib151G0248 Durio zibethinus HOM05D000621 ORTHO05D000421 3.9e-09 64.7 73 42.5
FvH4_7g33450 Fragaria vesca HOM05D000621 ORTHO05D000421 3.9e-09 64.7 73 41.1
Prupe.6G310200 Prunus persica HOM05D000621 ORTHO05D000421 3.9e-09 64.7 66 42.4
Hund03139 Selenicereus undatus HOM05D000621 ORTHO05D000421 3.9e-09 64.7 64 45.3
Migut.N00947 Erythranthe guttata HOM05D000621 ORTHO05D000421 5.1e-09 64.3 69 46.4
MSTRG.27927 Avicennia marina HOM05D000621 ORTHO05D000421 6.6e-09 63.9 65 47.7
MD01G1232500 Malus domestica HOM05D000621 ORTHO05D000421 6.6e-09 63.9 75 40.0
Nitab4.5_0003044g0110 Nicotiana tabacum HOM05D000621 ORTHO05D000421 6.6e-09 63.9 75 41.3
Sc16g0009170 Simmondsia chinensis HOM05D000621 ORTHO05D000421 6.6e-09 63.9 68 47.1
Gohir.A13G176300 Gossypium hirsutum HOM05D000621 ORTHO05D000421 8.7e-09 63.5 72 44.4
SalBow8G1638 Salvia bowleyana HOM05D000621 ORTHO05D000421 8.7e-09 63.5 65 44.6
Thecc.05G325400 Theobroma cacao HOM05D000621 ORTHO05D000421 8.7e-09 63.5 76 42.1
vmacro15168 Vaccinium macrocarpon HOM05D000621 ORTHO05D000421 8.7e-09 63.5 70 38.6
Haze_04043 Corylus avellana HOM05D000621 ORTHO05D000421 1.1e-08 63.2 72 43.1
DCAR_002112 Daucus carota HOM05D000621 ORTHO05D000421 1.1e-08 63.2 75 38.7
Hma1.2p1_0052F.1_g030670 Hydrangea macrophylla HOM05D000621 ORTHO05D000421 1.1e-08 63.2 68 45.6
RcHm_v2.0_Chr1g0383531 Rosa chinensis HOM05D000621 ORTHO05D000421 1.5e-08 62.8 71 38.0
Sp7g03270 Schrenkiella parvula HOM05D000621 ORTHO05D000421 1.5e-08 62.8 67 43.3
Actinidia35509 Actinidia chinensis HOM05D000621 ORTHO05D000421 1.9e-08 62.4 65 41.5
Nitab4.5_0003838g0070 Nicotiana tabacum HOM05D000621 ORTHO05D000421 1.9e-08 62.4 75 40.0
Peaxi162Scf00357g00724 Petunia axillaris HOM05D000621 ORTHO05D000421 1.9e-08 62.4 75 40.0
AT3G06520 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 2.5e-08 62.0 63 46.0
SalBow3G2697 Salvia bowleyana HOM05D000621 ORTHO05D000421 2.5e-08 62.0 64 48.4
Lsat_1_v5_gn_6_116160 Lactuca sativa HOM05D000621 ORTHO05D000421 3.3e-08 61.6 71 40.8
Os05g0132400 Oryza sativa ssp. japonica HOM05D000621 ORTHO05D000421 3.3e-08 61.6 68 42.6
Hund03140 Selenicereus undatus HOM05D000621 ORTHO05D000421 3.3e-08 61.6 75 41.3
Actinidia06113 Actinidia chinensis HOM05D000621 ORTHO05D000421 4.3e-08 61.2 76 40.8
CANSAT21G1796 Cannabis sativa HOM05D000621 ORTHO05D000421 4.3e-08 61.2 81 38.3
COL.COLO4_34565 Corchorus olitorius HOM05D000058 ORTHO05D007484 4.3e-08 61.2 73 39.7
Gohir.D03G153648 Gossypium hirsutum HOM05D000621 ORTHO05D000421 4.3e-08 61.2 68 44.1
Gorai.003G161500 Gossypium raimondii HOM05D000621 ORTHO05D000421 4.3e-08 61.2 68 44.1
MD07G1304600 Malus domestica HOM05D000621 ORTHO05D000421 4.3e-08 61.2 75 40.0
Thecc.04G306400 Theobroma cacao HOM05D000621 ORTHO05D000421 4.3e-08 61.2 73 39.7
Carub.0003s0598 Capsella rubella HOM05D000621 ORTHO05D000421 5.6e-08 60.8 62 45.2
SHI18046 Sapria himalayana HOM05D000621 ORTHO05D000421 7.3e-08 60.5 67 40.3
PGSC0003DMG400002758 Solanum tuberosum HOM05D000621 ORTHO05D000421 7.3e-08 60.5 75 38.7
CAN.G1076.39 Capsicum annuum HOM05D000621 ORTHO05D000421 9.6e-08 60.1 73 38.4
Gohir.A01G035700 Gossypium hirsutum HOM05D000621 ORTHO05D000421 9.6e-08 60.1 77 42.9
Lj5C325G6 Lonicera japonica HOM05D000621 ORTHO05D000421 9.6e-08 60.1 67 44.8
unitig_26.g9551 Utricularia gibba HOM05D000621 ORTHO05D000421 9.6e-08 60.1 64 42.2
CARHR081070 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.2e-07 59.7 67 38.8
Ciclev10001744m.g Citrus clementina HOM05D000621 ORTHO05D000421 1.2e-07 59.7 68 44.1
HanXRQChr05g0148601 Helianthus annuus HOM05D000621 ORTHO05D000421 1.2e-07 59.7 68 44.1
Hund07303 Selenicereus undatus HOM05D000621 ORTHO05D000421 1.2e-07 59.7 69 42.0
Solyc01g100780.3 Solanum lycopersicum HOM05D000621 ORTHO05D000421 1.2e-07 59.7 75 38.7
Zm00001eb354850 Zea mays HOM05D000621 ORTHO05D000421 1.2e-07 59.7 63 47.6
Aqoxy2G02652 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 1.6e-07 59.3 64 48.4
AL3G17550 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.6e-07 59.3 67 40.3
Rhsim11G0097900 Rhododendron simsii HOM05D000621 ORTHO05D000421 1.6e-07 59.3 66 40.9
QL03p016316 Quercus lobata HOM05D000621 ORTHO05D000421 2.1e-07 58.9 68 42.6
Gohir.D01G023580 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.8e-07 58.5 77 42.9
Gorai.002G031600 Gossypium raimondii HOM05D000621 ORTHO05D000421 2.8e-07 58.5 77 42.9
Sopen01g044280 Solanum pennellii HOM05D000621 ORTHO05D000421 2.8e-07 58.5 75 37.3
MBI19_g03282_MAGBIO Magnolia biondii HOM05D000621 ORTHO05D000421 3.6e-07 58.2 67 41.8
QL03p016528 Quercus lobata HOM05D000621 ORTHO05D000421 3.6e-07 58.2 68 42.6
QL03p016640 Quercus lobata HOM05D000621 ORTHO05D000421 3.6e-07 58.2 68 42.6
THA.LOC104823716 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 3.6e-07 58.2 68 44.1
Eucgr.B01689 Eucalyptus grandis HOM05D000621 ORTHO05D000421 4.7e-07 57.8 64 43.8
Eucgr.L00253 Eucalyptus grandis HOM05D000621 ORTHO05D000421 4.7e-07 57.8 64 43.8
Gohir.A03G017864 Gossypium hirsutum HOM05D000621 ORTHO05D000421 4.7e-07 57.8 65 43.1
Phvul.007G202900 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 4.7e-07 57.8 70 41.4
Dinv30910 Davidia involucrata HOM05D000621 ORTHO05D000421 6.2e-07 57.4 71 39.4
TAR633G2377 Trochodendron aralioides HOM05D000621 ORTHO05D000421 6.2e-07 57.4 65 43.1
CAN.G456.16 Capsicum annuum HOM05D000621 ORTHO05D000421 8.1e-07 57.0 76 35.5
CiPaw.07G031400 Carya illinoinensis HOM05D000621 ORTHO05D000421 8.1e-07 57.0 71 40.8
Cc02_g35280 Coffea canephora HOM05D000621 ORTHO05D000421 8.1e-07 57.0 65 44.6
Dinv16752 Davidia involucrata HOM05D000193 ORTHO05D000421 8.1e-07 57.0 76 35.5
ECA246G1254 Erigeron canadensis HOM05D000621 ORTHO05D000421 8.1e-07 57.0 66 40.9
TWI75G0008 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 8.1e-07 57.0 72 40.3
GSVIVG01031264001 Vitis vinifera HOM05D000621 ORTHO05D000421 8.1e-07 57.0 63 42.9
Thhalv10020690m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 1.1e-06 56.6 63 42.9
TWI56G1461 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 1.1e-06 56.6 72 40.3
CAN.G65.95 Capsicum annuum HOM05D000621 ORTHO05D000421 1.4e-06 56.2 62 43.5
QL03p016784 Quercus lobata HOM05D000621 ORTHO05D000421 1.8e-06 55.8 68 41.2
Ah.04g158500 Amaranthus hybridus HOM05D000621 ORTHO05D000421 2.4e-06 55.5 63 42.9
Atru.chr2.240 Acer truncatum HOM05D000621 ORTHO05D000421 3.1e-06 55.1 64 43.8
AUR62038938 Chenopodium quinoa HOM05D000621 ORTHO05D000421 3.1e-06 55.1 61 39.3
MD04G1191600 Malus domestica HOM05D000621 ORTHO05D000421 3.1e-06 55.1 66 37.9
Solyc01g058170.4 Solanum lycopersicum HOM05D000621 ORTHO05D000421 3.1e-06 55.1 69 44.9
RcHm_v2.0_Chr3g0457541 Rosa chinensis HOM05D000621 ORTHO05D000421 4.0e-06 54.7 66 40.9
Actinidia31570 Actinidia chinensis HOM05D000621 ORTHO05D000421 5.2e-06 54.3 59 45.8
EL10Ac9g20935 Beta vulgaris HOM05D007938 ORTHO05D009929 5.2e-06 54.3 70 32.9
A03p13930 Brassica napus HOM05D001580 ORTHO05D001517 5.2e-06 54.3 51 52.9
BraA03t10694Z Brassica rapa HOM05D001580 ORTHO05D001517 5.2e-06 54.3 51 52.9
CAN.G456.2 Capsicum annuum HOM05D000621 ORTHO05D000421 5.2e-06 54.3 60 40.0
CAN.G65.67 Capsicum annuum HOM05D000621 ORTHO05D000421 5.2e-06 54.3 62 43.5
Thhalv10009728m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 5.2e-06 54.3 64 43.8
Oeu020921.1 Olea europaea HOM05D000621 ORTHO05D000421 5.2e-06 54.3 61 42.6
Potri.005G011100 Populus trichocarpa HOM05D000621 ORTHO05D000421 5.2e-06 54.3 64 42.2
CANSAT54G1464 Cannabis sativa HOM05D000621 ORTHO05D000421 6.9e-06 53.9 65 41.5
Nitab4.5_0010988g0010 Nicotiana tabacum HOM05D000621 ORTHO05D000421 6.9e-06 53.9 60 41.7
Psat0s3389g0040 Pisum sativum HOM05D000621 ORTHO05D000421 6.9e-06 53.9 64 42.2
Aqoxy1G02065 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 9.0e-06 53.5 65 36.9
Cpa.g.sc48.181 Carica papaya HOM05D000621 ORTHO05D000421 9.0e-06 53.5 64 40.6
PGSC0003DMG400026947 Solanum tuberosum HOM05D000621 ORTHO05D000421 9.0e-06 53.5 62 43.5


User provided reference genes

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