Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 7.6e-64 246.9 116 100.0
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 2.8e-58 228.4 116 89.7
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 3.7e-58 228.0 115 90.4
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 3.7e-58 228.0 115 90.4
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 1.4e-57 226.1 111 90.1
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 3.4e-56 221.5 115 87.0
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.0e-55 219.9 115 87.0
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 1.7e-55 219.2 115 86.1
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 2.2e-55 218.8 115 86.1
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 2.2e-55 218.8 115 85.2
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 8.4e-55 216.9 115 85.2
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 3.2e-54 214.9 115 81.7
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 5.5e-54 214.2 116 81.0
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 5.5e-54 214.2 115 80.9
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.6e-53 212.6 115 80.0
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.6e-53 212.6 115 80.0
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.6e-53 212.6 115 80.0
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.6e-53 212.6 115 80.0
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 2.1e-53 212.2 115 80.9
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 2.1e-53 212.2 115 80.9
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 2.1e-53 212.2 115 80.0
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 3.5e-53 211.5 115 79.1
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 4.6e-53 211.1 115 80.0
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 7.9e-53 210.3 111 82.0
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 7.9e-53 210.3 115 80.0
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 1.0e-52 209.9 116 81.0
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 1.8e-52 209.1 115 80.0
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 1.8e-52 209.1 114 80.7
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.8e-52 209.1 115 79.1
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 1.8e-52 209.1 115 79.1
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.3e-52 208.8 115 79.1
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.0e-52 208.4 115 78.3
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 6.7e-52 207.2 115 77.4
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 6.7e-52 207.2 114 79.8
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 8.7e-52 206.8 115 79.1
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 8.7e-52 206.8 115 79.1
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 8.7e-52 206.8 111 80.2
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 1.1e-51 206.5 115 78.3
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 1.1e-51 206.5 115 78.3
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 1.1e-51 206.5 115 78.3
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 1.1e-51 206.5 115 78.3
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 1.1e-51 206.5 111 80.2
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 1.5e-51 206.1 116 78.4
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 1.5e-51 206.1 115 77.4
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 1.5e-51 206.1 115 77.4
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.9e-51 205.7 115 78.3
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.9e-51 205.7 115 78.3
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 1.9e-51 205.7 115 80.0
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 1.9e-51 205.7 115 79.1
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 2.5e-51 205.3 112 80.4
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.5e-51 205.3 115 78.3
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 3.3e-51 204.9 115 76.5
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 4.3e-51 204.5 114 78.1
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 4.3e-51 204.5 115 77.4
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.3e-51 204.5 112 80.4
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.3e-51 204.5 112 80.4
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 7.4e-51 203.8 110 81.8
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 7.4e-51 203.8 110 81.8
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 7.4e-51 203.8 111 79.3
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 9.7e-51 203.4 115 77.4
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 9.7e-51 203.4 115 78.3
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 1.3e-50 203.0 110 80.0
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 1.6e-50 202.6 114 78.1
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 1.6e-50 202.6 111 79.3
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.6e-50 202.6 110 79.1
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 2.2e-50 202.2 110 80.0
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 2.2e-50 202.2 113 78.8
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 2.8e-50 201.8 110 81.8
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.7e-50 201.4 115 77.4
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 3.7e-50 201.4 115 77.4
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 3.7e-50 201.4 115 76.5
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 3.7e-50 201.4 110 80.0
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.8e-50 201.1 115 77.4
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 4.8e-50 201.1 113 77.9
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 6.3e-50 200.7 110 78.2
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 6.3e-50 200.7 112 80.4
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 6.3e-50 200.7 111 78.4
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 1.8e-49 199.1 110 79.1
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 1.8e-49 199.1 112 76.8
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 1.8e-49 199.1 115 75.7
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 2.4e-49 198.7 114 77.2
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 3.1e-49 198.4 110 77.3
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 3.1e-49 198.4 115 75.7
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 3.1e-49 198.4 110 79.1
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 6.9e-49 197.2 116 76.7
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 2.0e-48 195.7 110 77.3
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 2.6e-48 195.3 115 73.9
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 2.6e-48 195.3 115 73.9
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 2.6e-48 195.3 115 73.9
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 3.4e-48 194.9 114 76.3
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.4e-48 194.9 114 76.3
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.4e-48 194.9 114 76.3
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.4e-48 194.9 114 76.3
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.4e-48 194.9 114 76.3
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 3.4e-48 194.9 110 75.5
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 5.9e-48 194.1 115 73.0
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 7.7e-48 193.7 115 74.8
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.3e-47 193.0 110 73.6
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.7e-47 192.6 151 60.3
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 5.0e-47 191.0 101 83.2
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 1.1e-46 189.9 100 84.0
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.9e-46 189.1 103 80.6
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 4.2e-46 188.0 100 83.0
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 4.2e-46 188.0 110 74.5
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 4.2e-46 188.0 110 74.5
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 4.2e-46 188.0 110 74.5
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 1.2e-45 186.4 100 82.0
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 2.1e-45 185.7 109 72.5
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 2.7e-45 185.3 100 82.0
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 3.6e-45 184.9 109 73.4
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 3.6e-45 184.9 115 73.0
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.6e-45 184.9 114 74.6
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 3.6e-45 184.9 113 69.9
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 3.6e-45 184.9 113 69.9
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 4.6e-45 184.5 100 82.0
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 6.1e-45 184.1 96 85.4
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 2.3e-44 182.2 110 71.8
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 1.5e-43 179.5 104 76.9
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.7e-42 176.0 107 70.1
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 1.7e-42 176.0 95 82.1
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.8e-42 174.5 113 68.1
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.8e-42 174.5 113 68.1
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.4e-41 172.9 107 69.2
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 1.8e-41 172.6 126 65.1
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 5.9e-40 167.5 108 69.4
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 2.2e-39 165.6 140 56.4
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 2.9e-39 165.2 107 67.3
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 6.5e-39 164.1 107 68.2
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 2.5e-38 162.2 84 83.3
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 3.0e-36 155.2 129 59.7
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 8.8e-36 153.7 79 83.5
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 1.1e-35 153.3 79 83.5
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 2.6e-35 152.1 75 85.3
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 6.3e-34 147.5 75 85.3
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.1e-33 146.7 95 67.4
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 3.1e-33 145.2 79 81.0
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 7.0e-33 144.1 79 79.7
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.5e-32 142.9 74 79.7
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 3.2e-30 135.2 74 75.7
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 5.5e-30 134.4 93 63.4
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 1.0e-28 130.2 101 53.5
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 6.3e-26 120.9 106 61.3
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 5.3e-25 117.9 95 50.5
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.6e-24 115.5 95 61.1
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.1e-21 105.9 75 68.0
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.1e-21 105.9 74 68.9
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 3.7e-18 95.1 63 61.9
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 3.7e-18 95.1 63 61.9
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 3.7e-18 95.1 63 61.9
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 6.3e-18 94.4 99 43.4
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 5.9e-16 87.8 57 64.9
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 1.0e-15 87.0 80 46.2
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 1.3e-15 86.7 83 55.4
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 1.1e-14 83.6 61 62.3
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 1.4e-12 76.6 153 34.6
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 1.8e-12 76.3 41 80.5
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 6.8e-12 74.3 83 41.0
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.1e-09 65.5 74 50.0
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 2.0e-08 62.8 36 72.2


User provided reference genes

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