Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 4.6e-275 950.7 504 100.0
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 1.7e-200 703.0 513 77.8
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 6.3e-171 604.7 395 79.0
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 9.4e-159 564.3 559 63.0
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 1.2e-158 563.9 515 66.0
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 1.4e-157 560.5 513 66.1
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 4.2e-151 538.9 392 73.0
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 6.1e-150 535.0 510 63.5
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 1.7e-144 516.9 394 68.8
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 6.5e-144 515.0 483 65.6
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 9.5e-111 404.8 505 51.7
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 1.2e-110 404.4 505 51.7
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 4.9e-107 392.5 515 50.1
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 2.4e-106 390.2 506 50.4
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 1.2e-105 387.9 513 51.3
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 7.8e-105 385.2 499 53.5
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 1.1e-103 381.3 505 52.5
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 1.9e-103 380.6 510 50.8
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 1.9e-103 380.6 513 49.3
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 2.1e-102 377.1 518 48.1
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 8.1e-102 375.2 498 50.2
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.8e-101 374.0 498 50.2
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 6.8e-101 372.1 413 49.9
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 3.2e-98 363.2 508 45.1
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 1.2e-97 361.3 509 48.7
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 4.6e-97 359.4 499 47.5
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 3.0e-96 356.7 497 48.7
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 6.6e-96 355.5 501 49.3
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 7.3e-95 352.1 496 48.0
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 1.2e-94 351.3 502 48.4
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 2.1e-94 350.5 503 48.1
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 8.1e-94 348.6 502 48.4
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 2.4e-93 347.1 503 47.9
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 2.0e-92 344.0 504 48.6
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 2.6e-92 343.6 503 46.3
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 3.4e-92 343.2 500 47.4
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 5.8e-92 342.4 503 46.7
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 5.8e-92 342.4 514 46.7
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 9.9e-92 341.7 507 48.5
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 9.9e-92 341.7 456 46.3
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 3.8e-91 339.7 514 47.3
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 6.4e-91 339.0 409 47.9
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 1.1e-90 338.2 504 47.8
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 3.2e-90 336.7 511 41.9
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 9.2e-90 335.1 439 46.2
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 3.5e-89 333.2 502 46.8
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.3e-88 331.3 508 46.7
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 3.0e-88 330.1 498 45.8
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 2.5e-87 327.0 514 45.9
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 1.5e-84 317.8 512 41.6
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 7.6e-84 315.5 506 44.7
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 9.9e-84 315.1 506 43.7
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 3.8e-83 313.2 514 45.7
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 4.9e-83 312.8 506 45.3
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 2.4e-82 310.5 549 41.2
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 1.2e-81 308.1 577 41.1
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 2.7e-81 307.0 531 38.4
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 4.6e-81 306.2 400 44.8
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 1.9e-79 300.8 503 44.1
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 8.1e-78 295.4 504 42.9
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 3.1e-77 293.5 571 39.8
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 2.0e-76 290.8 512 42.2
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 5.8e-76 289.3 504 42.7
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 4.9e-75 286.2 417 43.4
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 2.4e-74 283.9 567 39.3
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 3.2e-74 283.5 568 39.6
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 5.4e-74 282.7 297 50.8
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 1.6e-73 281.2 510 43.3
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 2.1e-70 270.8 407 42.0
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 6.2e-70 269.2 508 41.1
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 1.4e-69 268.1 505 43.0
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 3.1e-69 266.9 504 41.5
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 3.1e-69 266.9 504 41.5
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 1.2e-68 265.0 403 41.7
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 3.2e-66 256.9 265 53.2
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 5.5e-66 256.1 495 42.0
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 4.6e-65 253.1 485 40.2
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 6.0e-65 252.7 464 41.4
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 1.0e-64 251.9 383 47.5
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 1.3e-64 251.5 536 40.1
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 7.4e-63 245.7 503 41.6
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 1.3e-62 245.0 282 48.2
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 2.1e-62 244.2 508 40.2
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.8e-61 241.1 502 41.4
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 1.5e-60 238.0 511 39.5
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 2.3e-56 224.2 489 35.0
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 7.4e-55 219.2 283 46.6
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 7.6e-52 209.1 329 46.5
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 2.9e-51 207.2 211 60.2
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 6.5e-51 206.1 443 33.2
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.4e-48 198.4 499 38.1
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 2.2e-43 181.0 314 48.4
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.4e-42 178.3 360 36.9
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.7e-41 174.1 288 41.7
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 4.7e-41 173.3 181 51.9
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 1.8e-40 171.4 412 34.5
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 1.4e-37 161.8 511 28.8
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 3.1e-37 160.6 349 32.1
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.6e-33 148.3 344 38.4
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 7.0e-29 132.9 150 50.7
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 9.4e-26 122.5 149 47.7
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 8.8e-24 115.9 398 28.6
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 1.3e-22 112.1 316 30.4
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.6e-20 105.1 107 57.9
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 6.8e-16 89.7 99 52.5
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 9.8e-15 85.9 196 36.2
Nitab4.5_0022301g0010 Nicotiana tabacum HOM05D007081 ORTHO05D008834 6.6e-11 73.2 187 46.5
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.9e-10 71.6 58 60.3
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 9.5e-10 69.3 96 44.8
CAN.G12.29 Capsicum annuum HOM05D001989 ORTHO05D000346 3.0e-08 64.3 133 37.6
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 3.0e-08 64.3 155 31.6
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 1.2e-07 62.4 157 30.6
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 2.6e-07 61.2 135 31.9
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 3.4e-07 60.8 141 31.9
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 4.4e-07 60.5 133 33.1
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 5.7e-07 60.1 140 30.7
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 5.7e-07 60.1 131 35.9
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 7.5e-07 59.7 103 36.9
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 9.8e-07 59.3 149 31.5
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 1.7e-06 58.5 140 29.3
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 2.2e-06 58.2 208 27.4
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 2.2e-06 58.2 139 32.4
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 2.2e-06 58.2 188 28.7
FvH4_7g04410 Fragaria vesca HOM05D005384 ORTHO05D006477 2.8e-06 57.8 131 35.1
FAN03G3298 Fragaria x ananassa HOM05D005384 ORTHO05D006477 2.8e-06 57.8 131 35.1
FAN06G1991 Fragaria x ananassa HOM05D005384 ORTHO05D006477 2.8e-06 57.8 131 35.1
FAN10G2966 Fragaria x ananassa HOM05D005384 ORTHO05D006477 2.8e-06 57.8 131 35.1
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 2.8e-06 57.8 140 30.7
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 3.7e-06 57.4 185 27.6
arahy.Tifrunner.gnm1.ann1.HJ5DAC Arachis hypogaea HOM05D007081 ORTHO05D008834 4.9e-06 57.0 40 70.0
COL.COLO4_24446 Corchorus olitorius HOM05D005384 ORTHO05D006477 4.9e-06 57.0 139 30.9
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 4.9e-06 57.0 158 31.6
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 4.9e-06 57.0 168 27.4
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 4.9e-06 57.0 141 30.5
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 6.3e-06 56.6 197 26.4
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 6.3e-06 56.6 140 30.7
CANSAT25G0269 Cannabis sativa HOM05D005384 ORTHO05D006477 8.3e-06 56.2 266 26.3
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 8.3e-06 56.2 65 52.3
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 8.3e-06 56.2 137 34.3


User provided reference genes

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