Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 6.0e-70 267.3 127 100.0
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 3.8e-48 194.9 125 72.0
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.4e-41 171.8 125 63.2
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.2e-33 146.7 125 58.4
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 2.0e-33 146.0 125 59.2
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 2.0e-33 146.0 125 59.2
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 2.6e-33 145.6 125 59.2
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 4.5e-33 144.8 125 59.2
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 7.6e-33 144.1 125 58.4
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 7.6e-33 144.1 127 58.3
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 9.9e-33 143.7 127 58.3
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.7e-32 142.9 125 58.4
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 1.7e-32 142.9 127 58.3
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 2.2e-32 142.5 125 57.6
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.8e-32 141.7 125 56.8
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 4.9e-32 141.4 125 58.4
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 6.4e-32 141.0 125 57.6
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 8.4e-32 140.6 126 57.9
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 1.4e-31 139.8 127 58.3
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 2.4e-31 139.0 126 57.9
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.2e-31 138.3 125 57.6
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.2e-31 138.3 125 54.4
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 4.2e-31 138.3 125 56.0
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 5.5e-31 137.9 126 56.3
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 7.1e-31 137.5 126 57.1
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 9.3e-31 137.1 125 56.0
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 9.3e-31 137.1 125 56.0
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 9.3e-31 137.1 125 57.6
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 9.3e-31 137.1 125 55.2
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 1.6e-30 136.3 125 55.2
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.6e-30 136.3 125 56.0
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 1.6e-30 136.3 126 54.0
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 2.7e-30 135.6 126 54.8
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 2.7e-30 135.6 125 56.8
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.7e-30 135.6 126 55.6
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 2.7e-30 135.6 127 55.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.5e-30 135.2 125 58.4
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 3.5e-30 135.2 125 56.8
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.6e-30 134.8 126 54.0
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 4.6e-30 134.8 125 55.2
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 4.6e-30 134.8 125 55.2
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 6.0e-30 134.4 126 54.0
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 6.0e-30 134.4 126 54.8
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 7.9e-30 134.0 126 55.6
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 7.9e-30 134.0 125 55.2
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.0e-29 133.7 125 53.6
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.3e-29 133.3 125 56.0
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 1.8e-29 132.9 125 54.4
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 1.8e-29 132.9 126 54.0
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 2.3e-29 132.5 126 54.0
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.0e-29 132.1 125 53.6
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 3.0e-29 132.1 126 54.0
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 3.9e-29 131.7 126 54.0
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 3.9e-29 131.7 126 54.8
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 5.1e-29 131.3 126 54.0
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.1e-29 131.3 125 54.4
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 5.1e-29 131.3 126 54.0
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 5.1e-29 131.3 126 55.6
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 5.1e-29 131.3 126 53.2
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 6.7e-29 131.0 125 53.6
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 6.7e-29 131.0 127 53.5
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 8.7e-29 130.6 126 53.2
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 1.1e-28 130.2 126 53.2
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 1.5e-28 129.8 126 54.0
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.5e-28 129.8 125 53.6
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.9e-28 129.4 126 51.6
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.9e-28 129.4 126 53.2
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 1.9e-28 129.4 127 55.9
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.9e-28 129.4 125 54.4
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 4.3e-28 128.3 126 54.8
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 4.3e-28 128.3 126 52.4
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 4.3e-28 128.3 126 51.6
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 7.4e-28 127.5 126 52.4
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 9.6e-28 127.1 124 50.8
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.3e-27 126.7 126 50.8
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.1e-27 125.9 126 54.8
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.1e-27 125.9 126 54.8
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 2.1e-27 125.9 126 54.8
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 2.8e-27 125.6 126 52.4
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.8e-27 125.6 125 52.0
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.8e-27 125.6 126 50.8
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 3.7e-27 125.2 126 50.0
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 3.7e-27 125.2 125 50.4
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 4.8e-27 124.8 126 51.6
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 6.2e-27 124.4 126 50.8
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 1.1e-26 123.6 126 53.2
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.4e-26 123.2 126 50.0
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.4e-26 123.2 126 50.0
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.8e-26 122.9 125 50.4
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 2.4e-26 122.5 127 48.8
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 2.4e-26 122.5 126 50.8
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 3.1e-26 122.1 125 52.0
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.1e-26 122.1 126 50.8
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 3.1e-26 122.1 126 51.6
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 6.9e-26 120.9 127 51.2
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 6.9e-26 120.9 126 50.0
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 9.0e-26 120.6 126 50.0
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 9.0e-26 120.6 126 49.2
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.2e-25 120.2 128 52.3
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 1.2e-25 120.2 126 48.4
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 1.2e-25 120.2 126 48.4
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.5e-25 119.8 125 47.2
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.0e-25 119.4 140 47.9
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 2.6e-25 119.0 126 48.4
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 1.0e-24 117.1 150 46.0
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 6.5e-24 114.4 125 48.0
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.4e-23 113.2 152 42.1
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.5e-23 112.5 125 45.6
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.2e-22 110.2 125 44.8
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.6e-22 109.8 128 45.3
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 2.7e-22 109.0 128 46.1
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 7.9e-22 107.5 128 46.1
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.3e-21 105.9 100 57.0
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 2.3e-21 105.9 153 42.5
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 3.3e-20 102.1 199 34.2
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 5.3e-18 94.7 111 47.7
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 6.9e-18 94.4 232 31.0
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.6e-17 92.4 129 41.9
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 7.6e-17 90.9 130 38.5
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 2.2e-16 89.4 125 41.6
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 5.0e-16 88.2 126 41.3
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 5.0e-16 88.2 78 57.7
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.1e-15 87.0 78 56.4
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 1.1e-15 87.0 79 54.4
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.2e-14 83.6 78 53.8
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.6e-14 82.0 109 39.4
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 3.0e-13 79.0 81 50.6
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 3.0e-13 79.0 140 35.7
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.7e-12 74.7 127 37.0
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 4.8e-11 71.6 125 39.2
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.4e-10 70.1 83 49.4
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 5.3e-10 68.2 128 35.2
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.6e-09 65.9 92 41.3
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 6.5e-08 61.2 130 33.1
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 4.7e-06 55.1 38 63.2
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 6.1e-06 54.7 37 64.9
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 6.1e-06 54.7 38 60.5


User provided reference genes

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