Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 0.0e+00 1375.5 661 100.0
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 1.6e-214 750.0 660 58.6
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 7.8e-214 747.7 660 58.3
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 4.3e-212 741.9 660 58.0
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 4.0e-210 735.3 662 57.6
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 1.2e-209 733.8 662 57.4
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 2.6e-209 732.6 662 58.2
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.3e-208 730.3 662 57.1
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 7.1e-207 724.5 663 56.1
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 1.6e-206 723.4 657 56.8
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 3.5e-206 722.2 664 55.1
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.0e-206 721.5 663 57.5
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 6.0e-206 721.5 657 56.8
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 1.7e-205 719.9 657 56.0
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 6.6e-205 718.0 668 56.3
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 6.6e-205 718.0 657 56.6
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 8.7e-205 717.6 662 56.9
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.3e-203 713.8 660 56.7
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.1e-203 713.0 669 54.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.8e-203 712.6 663 56.4
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 8.1e-203 711.1 667 55.8
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.1e-202 710.7 665 54.4
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.4e-202 710.3 655 55.9
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 5.3e-202 708.4 657 56.0
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 9.0e-202 707.6 671 55.0
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.0e-201 706.4 667 54.4
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.0e-201 706.4 667 54.4
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 2.6e-201 706.1 668 55.4
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 3.4e-201 705.7 664 54.4
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 4.5e-201 705.3 664 55.1
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 4.5e-201 705.3 670 54.9
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.7e-200 703.4 661 56.4
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 1.7e-200 703.4 656 55.0
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 2.2e-200 703.0 651 55.9
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 2.9e-200 702.6 666 55.7
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.1e-199 700.7 660 54.7
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 1.9e-199 699.9 663 54.4
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.2e-198 697.2 665 53.7
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.2e-198 697.2 664 53.9
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 2.1e-198 696.4 664 53.9
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.0e-197 694.1 665 55.3
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 1.8e-197 693.3 707 52.9
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.0e-197 692.6 665 53.4
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 8.7e-197 691.0 652 53.7
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.9e-196 689.9 652 53.8
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.9e-196 689.9 683 53.0
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 3.3e-196 689.1 667 54.7
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 4.3e-196 688.7 656 55.0
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 5.6e-196 688.3 664 53.2
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 7.4e-196 688.0 661 54.2
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 9.6e-196 687.6 723 50.6
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 1.6e-195 686.8 654 54.1
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.6e-195 686.8 657 54.8
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 1.6e-195 686.8 656 55.0
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.1e-195 686.4 669 53.8
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 2.8e-195 686.0 652 53.4
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 2.8e-195 686.0 654 53.8
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.4e-194 683.7 664 53.9
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.8e-194 683.3 651 53.8
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 2.4e-194 682.9 652 53.1
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 2.4e-194 682.9 652 53.1
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 4.0e-194 682.2 652 53.2
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 6.9e-194 681.4 652 52.9
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 9.0e-194 681.0 667 53.7
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 9.0e-194 681.0 652 53.7
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.5e-193 680.2 652 53.7
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 2.6e-193 679.5 652 52.9
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.4e-193 679.1 652 52.6
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.3e-192 677.2 651 53.3
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 1.3e-192 677.2 652 53.2
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.7e-192 676.8 678 51.6
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 1.7e-192 676.8 669 53.4
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 7.1e-191 671.4 673 52.9
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.0e-189 667.5 711 50.1
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.8e-189 666.8 675 52.1
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.3e-189 666.4 666 53.5
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 3.0e-189 666.0 661 53.1
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 2.5e-188 662.9 658 51.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 3.3e-188 662.5 670 51.6
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 2.1e-187 659.8 613 54.8
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.1e-186 657.5 688 50.3
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 9.0e-186 654.4 685 51.2
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 1.2e-185 654.1 670 51.5
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 7.6e-185 651.4 659 52.0
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 7.6e-185 651.4 683 51.0
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 3.2e-183 646.0 644 52.6
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 5.5e-183 645.2 681 51.0
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 7.2e-183 644.8 690 50.9
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 4.6e-182 642.1 606 56.3
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 1.5e-180 637.1 678 49.0
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 7.4e-180 634.8 664 51.4
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.3e-179 634.0 676 50.6
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 5.3e-178 628.6 667 50.5
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 2.0e-177 626.7 707 48.8
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 4.5e-177 625.5 674 48.4
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 2.2e-176 623.2 671 49.8
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 2.5e-175 619.8 660 50.8
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 7.2e-175 618.2 657 49.5
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 9.4e-175 617.8 572 55.2
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 2.7e-174 616.3 671 49.2
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 7.9e-174 614.8 572 54.9
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 7.9e-174 614.8 675 48.9
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 1.8e-173 613.6 676 48.4
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.8e-173 613.6 610 54.6
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 3.0e-173 612.8 671 48.9
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 4.3e-172 609.0 677 48.0
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.8e-170 603.6 677 47.3
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.3e-170 602.1 559 55.3
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 2.0e-169 600.1 653 49.8
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 3.2e-167 592.8 809 43.9
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 7.2e-167 591.7 653 48.7
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.1e-166 590.1 648 50.9
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 1.4e-165 587.4 669 48.0
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.6e-161 573.9 677 45.6
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.5e-161 572.8 661 48.6
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.5e-159 565.5 660 49.1
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 1.8e-157 560.5 537 53.8
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 3.4e-148 529.6 510 52.5
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 7.5e-148 528.5 605 49.4
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.6e-145 520.8 494 54.9
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.7e-142 509.2 640 43.0
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 3.1e-138 496.5 877 37.2
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 7.0e-138 495.4 677 41.8
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 3.4e-132 476.5 505 50.9
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 9.8e-132 474.9 643 44.2
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.7e-123 447.6 337 65.0
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.5e-119 433.7 508 48.0
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.9e-114 417.5 674 38.4
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.2e-113 414.8 404 52.7
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 3.5e-113 413.3 679 37.1
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 7.8e-105 385.6 636 36.6
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 2.3e-104 384.0 338 57.7
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.2e-102 378.3 314 58.3
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.4e-101 374.0 500 44.8
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.7e-99 367.9 276 63.4
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 9.6e-95 352.1 334 53.9
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 6.4e-91 339.3 666 36.9
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 8.4e-75 285.8 270 56.3
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 3.5e-73 280.4 377 44.6
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.0e-72 278.9 310 51.3
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.4e-69 267.7 651 30.1
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.6e-65 255.0 234 53.4
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 7.9e-65 252.7 491 34.6
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.2e-60 238.8 385 38.7
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 3.2e-58 230.7 487 32.6
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 7.2e-58 229.6 436 35.1
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 3.1e-53 214.2 592 29.2
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 6.9e-53 213.0 230 48.7
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.4e-50 205.3 203 54.7
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 2.6e-47 194.5 125 72.0
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 7.4e-47 193.0 183 53.0
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 6.3e-46 189.9 113 77.9
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 2.0e-44 184.9 219 46.6
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.2e-42 177.6 304 36.8
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.6e-36 158.7 108 73.1
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 9.4e-34 149.4 200 48.0
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 1.2e-28 132.5 65 89.2
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 4.2e-26 124.0 138 51.4
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.2e-24 117.1 141 48.9
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 3.1e-21 107.8 107 55.1
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 2.8e-17 94.7 56 69.6
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 2.0e-15 88.6 65 66.2
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 1.7e-14 85.5 231 29.4
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 2.2e-14 85.1 56 62.5
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.6e-12 79.0 46 73.9
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 1.7e-11 75.5 80 50.0
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 4.3e-10 70.9 61 54.1
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 4.7e-09 67.4 48 64.6
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 8.9e-08 63.2 63 44.4
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 7.5e-07 60.1 42 64.3
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 6.4e-06 57.0 48 56.2
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 8.3e-06 56.6 42 59.5


User provided reference genes

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