Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30900 Trifolium pratense HOM05D002250 ORTHO05D002393 7.5e-37 157.1 109 100.0
Psat5g026920 Pisum sativum HOM05D002250 ORTHO05D002393 1.1e-24 116.7 95 86.3
Medtr3g108160 Medicago truncatula HOM05D002250 ORTHO05D002393 3.0e-22 108.6 95 73.7
CANSAT25G3278 Cannabis sativa HOM05D002250 ORTHO05D002393 5.4e-19 97.8 95 58.9
Lj1g0015322 Lotus japonicus HOM05D002250 ORTHO05D002393 1.0e-17 93.6 95 54.7
MD15G1114800 Malus domestica HOM05D002250 ORTHO05D002393 1.0e-17 93.6 95 57.9
Ca_15693_v3 Cicer arietinum L. HOM05D002250 ORTHO05D002393 2.9e-17 92.0 95 66.3
Haze_21627 Corylus avellana HOM05D002250 ORTHO05D002393 6.6e-17 90.9 95 56.8
TPR.G12410 Trifolium pratense HOM05D002250 ORTHO05D002393 6.6e-17 90.9 95 55.8
ATR0121G009 Amborella trichopoda HOM05D002250 ORTHO05D002393 8.6e-17 90.5 92 59.8
THA.LOC104804580 Tarenaya hassleriana HOM05D002250 ORTHO05D002393 8.6e-17 90.5 95 55.8
Atru.chr7.2320 Acer truncatum HOM05D002250 ORTHO05D002393 1.1e-16 90.1 95 56.8
Glyma.06G073900 Glycine max HOM05D002250 ORTHO05D002393 1.5e-16 89.7 101 56.4
Lalb_Chr11g0064001 Lupinus albus HOM05D002250 ORTHO05D002393 1.5e-16 89.7 95 54.7
Lj1g0018321 Lotus japonicus HOM05D002250 ORTHO05D002393 1.9e-16 89.4 92 66.3
Nn8g39268 Nelumbo nucifera HOM05D002250 ORTHO05D002393 1.9e-16 89.4 95 57.9
VMungo1309G3096 Vigna mungo HOM05D002250 ORTHO05D002393 1.9e-16 89.4 95 54.7
Eucgr.C02862 Eucalyptus grandis HOM05D002250 ORTHO05D002393 2.5e-16 89.0 95 54.7
Eucgr.C02867 Eucalyptus grandis HOM05D002250 ORTHO05D002393 2.5e-16 89.0 95 54.7
TAR624G0306 Trochodendron aralioides HOM05D002250 ORTHO05D002393 2.5e-16 89.0 95 54.7
MD15G1114700 Malus domestica HOM05D002250 ORTHO05D002393 3.3e-16 88.6 95 55.8
PGR044G1448 Punica granatum HOM05D002250 ORTHO05D002393 3.3e-16 88.6 95 67.4
vmacro05449 Vaccinium macrocarpon HOM05D002250 ORTHO05D002393 3.3e-16 88.6 95 55.8
Glyma.04G072800 Glycine max HOM05D002250 ORTHO05D002393 4.3e-16 88.2 95 54.7
Phvul.009G098500 Phaseolus vulgaris HOM05D002250 ORTHO05D002393 4.3e-16 88.2 97 55.7
Migut.E01503 Erythranthe guttata HOM05D002250 ORTHO05D002393 5.6e-16 87.8 99 56.6
Glyma.06G074000 Glycine max HOM05D002250 ORTHO05D002393 5.6e-16 87.8 95 54.7
SalBow8G4140 Salvia bowleyana HOM05D002250 ORTHO05D002393 5.6e-16 87.8 100 56.0
GSVIVG01035729001 Vitis vinifera HOM05D002250 ORTHO05D002393 5.6e-16 87.8 95 56.8
Actinidia13423 Actinidia chinensis HOM05D002250 ORTHO05D002393 7.3e-16 87.4 95 54.7
CSS0015478 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 7.3e-16 87.4 95 55.8
CSS0023863 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 7.3e-16 87.4 95 55.8
CSS0014891 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 9.5e-16 87.0 95 53.7
CSS0039849 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 9.5e-16 87.0 95 53.7
Duzib150G0091 Durio zibethinus HOM05D002250 ORTHO05D002393 9.5e-16 87.0 108 52.8
Glyma.04G072700 Glycine max HOM05D002250 ORTHO05D002393 9.5e-16 87.0 95 54.7
Gohir.A13G203800 Gossypium hirsutum HOM05D002250 ORTHO05D002393 9.5e-16 87.0 95 54.7
Phvul.009G098600 Phaseolus vulgaris HOM05D002250 ORTHO05D002393 9.5e-16 87.0 95 57.9
Ah.14g081380 Amaranthus hybridus HOM05D002250 ORTHO05D002393 1.2e-15 86.7 92 54.3
arahy.Tifrunner.gnm1.ann1.YQ853S Arachis hypogaea HOM05D002250 ORTHO05D002393 1.2e-15 86.7 90 75.6
Cpa.g.sc23.145 Carica papaya HOM05D002250 ORTHO05D002393 1.6e-15 86.3 95 53.7
Gohir.A06G048200 Gossypium hirsutum HOM05D002250 ORTHO05D002393 1.6e-15 86.3 95 55.8
Nn2g11829 Nelumbo nucifera HOM05D002250 ORTHO05D002393 1.6e-15 86.3 95 55.8
TWI63G0194 Tripterygium wilfordii HOM05D002250 ORTHO05D002393 1.6e-15 86.3 95 54.7
Duzib168G0991 Durio zibethinus HOM05D002250 ORTHO05D002393 2.1e-15 85.9 95 54.7
Gohir.D06G048200 Gossypium hirsutum HOM05D002250 ORTHO05D002393 2.1e-15 85.9 95 55.8
Gorai.010G054000 Gossypium raimondii HOM05D002250 ORTHO05D002393 2.1e-15 85.9 95 55.8
QL12p031209 Quercus lobata HOM05D002250 ORTHO05D002393 2.1e-15 85.9 86 58.1
TAR636G2212 Trochodendron aralioides HOM05D002250 ORTHO05D002393 2.1e-15 85.9 95 54.7
arahy.Tifrunner.gnm1.ann1.XP9K23 Arachis hypogaea HOM05D002250 ORTHO05D002393 3.6e-15 85.1 88 77.3
Thecc.09G115200 Theobroma cacao HOM05D002250 ORTHO05D002393 3.6e-15 85.1 95 55.8
CiPaw.08G016000 Carya illinoinensis HOM05D002250 ORTHO05D002393 4.7e-15 84.7 95 55.8
MBI04_g20760_MAGBIO Magnolia biondii HOM05D002250 ORTHO05D002393 4.7e-15 84.7 95 54.7
Prupe.1G466200 Prunus persica HOM05D002250 ORTHO05D002393 4.7e-15 84.7 95 52.6
VMungo1309G1339 Vigna mungo HOM05D002250 ORTHO05D002393 4.7e-15 84.7 95 53.7
Gohir.A05G011000 Gossypium hirsutum HOM05D002250 ORTHO05D002393 6.1e-15 84.3 95 53.7
Nitab4.5_0011857g0010 Nicotiana tabacum HOM05D002250 ORTHO05D002393 6.1e-15 84.3 95 52.6
Actinidia14641 Actinidia chinensis HOM05D002250 ORTHO05D002393 8.0e-15 84.0 95 52.6
Hund09179 Selenicereus undatus HOM05D002250 ORTHO05D002393 8.0e-15 84.0 92 53.3
Solyc08g067910.3 Solanum lycopersicum HOM05D002250 ORTHO05D002393 8.0e-15 84.0 95 51.6
PGSC0003DMG400014503 Solanum tuberosum HOM05D002250 ORTHO05D002393 8.0e-15 84.0 95 51.6
Dinv41574 Davidia involucrata HOM05D002250 ORTHO05D002393 1.0e-14 83.6 95 53.7
Migut.A00270 Erythranthe guttata HOM05D002250 ORTHO05D002393 1.0e-14 83.6 99 55.6
EL10Ac8g18546 Beta vulgaris HOM05D002250 ORTHO05D002393 1.4e-14 83.2 92 51.1
AUR62011032 Chenopodium quinoa HOM05D002250 ORTHO05D002393 1.4e-14 83.2 92 54.3
AUR62033405 Chenopodium quinoa HOM05D002250 ORTHO05D002393 1.4e-14 83.2 92 54.3
Gohir.D13G209100 Gossypium hirsutum HOM05D002250 ORTHO05D002393 1.4e-14 83.2 95 53.7
Gorai.013G238200 Gossypium raimondii HOM05D002250 ORTHO05D002393 1.4e-14 83.2 95 53.7
MBI01_g10037_MAGBIO Magnolia biondii HOM05D002250 ORTHO05D002393 1.4e-14 83.2 96 53.1
PSO782G3325 Papaver somniferum HOM05D002250 ORTHO05D002393 1.4e-14 83.2 95 51.6
Thecc.09G115100 Theobroma cacao HOM05D002250 ORTHO05D002393 1.4e-14 83.2 95 53.7
TWI63G1405 Tripterygium wilfordii HOM05D002250 ORTHO05D002393 1.4e-14 83.2 95 52.6
TAR626G1176 Trochodendron aralioides HOM05D002250 ORTHO05D002393 1.4e-14 83.2 95 51.6
vmacro20672 Vaccinium macrocarpon HOM05D002250 ORTHO05D002393 1.4e-14 83.2 92 54.3
CiPaw.07G217300 Carya illinoinensis HOM05D002250 ORTHO05D002393 1.8e-14 82.8 95 53.7
Gohir.D05G011700 Gossypium hirsutum HOM05D002250 ORTHO05D002393 1.8e-14 82.8 95 52.6
Gorai.009G012000 Gossypium raimondii HOM05D002250 ORTHO05D002393 1.8e-14 82.8 95 52.6
PSO063G6573 Papaver somniferum HOM05D002250 ORTHO05D002393 1.8e-14 82.8 95 51.6
Sopen08g021820 Solanum pennellii HOM05D002250 ORTHO05D002393 1.8e-14 82.8 95 51.6
PGSC0003DMG400004557 Solanum tuberosum HOM05D002250 ORTHO05D002393 1.8e-14 82.8 93 51.6
CAN.G21.21 Capsicum annuum HOM05D002250 ORTHO05D002393 2.3e-14 82.4 95 50.5
Manes.16G064900 Manihot esculenta HOM05D002250 ORTHO05D002393 2.3e-14 82.4 95 62.1
Sc18g0001010 Simmondsia chinensis HOM05D002250 ORTHO05D002393 2.3e-14 82.4 98 54.1
Aqoxy7G01831 Aquilegia oxysepala HOM05D002250 ORTHO05D002393 3.0e-14 82.0 98 55.1
Ciclev10008850m.g Citrus clementina HOM05D002250 ORTHO05D002393 3.0e-14 82.0 95 49.5
Nitab4.5_0000125g0090 Nicotiana tabacum HOM05D002250 ORTHO05D002393 3.0e-14 82.0 95 51.6
Lj7C641G12 Lonicera japonica HOM05D002250 ORTHO05D002393 4.0e-14 81.6 95 54.7
RcHm_v2.0_Chr6g0312681 Rosa chinensis HOM05D002250 ORTHO05D002393 4.0e-14 81.6 95 55.8
SEGI_03224 Sequoiadendron giganteum HOM05D002250 ORTHO05D002393 4.0e-14 81.6 95 51.6
MELO3C011211.2 Cucumis melo HOM05D002250 ORTHO05D002393 5.2e-14 81.3 90 54.4
CsaV3_2G031590 Cucumis sativus L. HOM05D002286 ORTHO05D002468 5.2e-14 81.3 90 54.4
Sed0020602 Sechium edule HOM05D002250 ORTHO05D002393 5.2e-14 81.3 90 53.3
ClCG08G012870 Citrullus lanatus HOM05D002250 ORTHO05D002393 8.9e-14 80.5 90 53.3
Peaxi162Scf00105g01218 Petunia axillaris HOM05D002250 ORTHO05D002393 8.9e-14 80.5 95 51.6
MSTRG.25877 Avicennia marina HOM05D002250 ORTHO05D002393 1.2e-13 80.1 99 52.5
Ciclev10008805m.g Citrus clementina HOM05D002250 ORTHO05D002393 1.2e-13 80.1 108 47.2
Dinv35878 Davidia involucrata HOM05D002250 ORTHO05D002393 1.2e-13 80.1 95 51.6
Hma1.2p1_0175F.1_g077320 Hydrangea macrophylla HOM05D002250 ORTHO05D002393 1.2e-13 80.1 95 57.9
MD15G1190200 Malus domestica HOM05D002250 ORTHO05D002393 1.2e-13 80.1 95 49.5
Duzib187G1129 Durio zibethinus HOM05D002250 ORTHO05D002393 1.5e-13 79.7 95 52.6
Atru.chr7.1293 Acer truncatum HOM05D002250 ORTHO05D002393 2.0e-13 79.3 96 52.1
Potri.018G072400 Populus trichocarpa HOM05D002250 ORTHO05D002393 2.0e-13 79.3 95 50.5
SalBow4G1136 Salvia bowleyana HOM05D002250 ORTHO05D002393 2.0e-13 79.3 94 54.3
CDE06G2071 Ceratophyllum demersum HOM05D002250 ORTHO05D002393 2.6e-13 79.0 100 51.0
Sed0005671 Sechium edule HOM05D002250 ORTHO05D002393 3.4e-13 78.6 90 51.1
HPP92_018348 Vanilla planifolia HOM05D002250 ORTHO05D002393 3.4e-13 78.6 95 49.5
HPP92_018382 Vanilla planifolia HOM05D002250 ORTHO05D002393 3.4e-13 78.6 95 49.5
Lsat_1_v5_gn_7_43121 Lactuca sativa HOM05D002250 ORTHO05D002393 4.4e-13 78.2 96 49.0
Sabra06G0123200 Salix brachista HOM05D002250 ORTHO05D002393 4.4e-13 78.2 94 51.1
Hund26116 Selenicereus undatus HOM05D002250 ORTHO05D002393 5.8e-13 77.8 92 47.8
GSVIVG01015436001 Vitis vinifera HOM05D002250 ORTHO05D002393 7.5e-13 77.4 95 49.5
CDE07G1083 Ceratophyllum demersum HOM05D002250 ORTHO05D002393 9.8e-13 77.0 95 50.5
Potri.006G157000 Populus trichocarpa HOM05D002250 ORTHO05D002393 1.7e-12 76.3 89 51.7
Sabra18G0064200 Salix brachista HOM05D002250 ORTHO05D002393 1.7e-12 76.3 95 48.4
Aa31LG8G11090 Aethionema arabicum HOM05D002250 ORTHO05D002393 2.2e-12 75.9 95 50.5
Lalb_Chr08g0243771 Lupinus albus HOM05D002250 ORTHO05D002393 2.2e-12 75.9 100 54.0
MSTRG.14003 Avicennia marina HOM05D002250 ORTHO05D002393 3.7e-12 75.1 95 48.4
CARHR100450 Cardamine hirsuta HOM05D002250 ORTHO05D002393 4.9e-12 74.7 95 47.4
FvH4_2g30200 Fragaria vesca HOM05D002250 ORTHO05D002393 4.9e-12 74.7 95 46.3
FAN24G3124 Fragaria x ananassa HOM05D002250 ORTHO05D002393 4.9e-12 74.7 95 46.3
HanXRQChr03g0062001 Helianthus annuus HOM05D002250 ORTHO05D002393 4.9e-12 74.7 96 53.1
HanXRQChr10g0317401 Helianthus annuus HOM05D002250 ORTHO05D002393 4.9e-12 74.7 96 60.4
FAN15G0251 Fragaria x ananassa HOM05D002250 ORTHO05D002393 6.4e-12 74.3 95 46.3
FAN20G1565 Fragaria x ananassa HOM05D002250 ORTHO05D002393 6.4e-12 74.3 95 46.3
Duzib168G0800 Durio zibethinus HOM05D002250 ORTHO05D002393 8.3e-12 73.9 95 49.5
Sp3g22160 Schrenkiella parvula HOM05D002250 ORTHO05D002393 8.3e-12 73.9 100 45.0
SGA_v2.0_scaffold163G38094 Striga asiatica HOM05D002250 ORTHO05D002393 8.3e-12 73.9 96 50.0
SGA_v2.0_scaffold169G38634 Striga asiatica HOM05D002250 ORTHO05D002393 1.1e-11 73.6 92 50.0
Ca_15694_v3 Cicer arietinum L. HOM05D002250 ORTHO05D002393 1.9e-11 72.8 79 77.2
A03p43620 Brassica napus HOM05D002250 ORTHO05D002393 2.4e-11 72.4 100 44.0
BraA03t13499Z Brassica rapa HOM05D002250 ORTHO05D002393 2.4e-11 72.4 95 45.3
COL.COLO4_34936 Corchorus olitorius HOM05D000417 ORTHO05D000342 2.4e-11 72.4 83 54.2
FAN27G0742 Fragaria x ananassa HOM05D002250 ORTHO05D002393 2.4e-11 72.4 95 45.3
Cc06_g09310 Coffea canephora HOM05D002250 ORTHO05D002393 3.2e-11 72.0 93 48.4
Lsat_1_v5_gn_8_94641 Lactuca sativa HOM05D002250 ORTHO05D002393 3.2e-11 72.0 96 47.9
Hma1.2p1_0018F.1_g013150 Hydrangea macrophylla HOM05D002250 ORTHO05D002393 5.4e-11 71.2 96 46.9
BcaC01g03317 Brassica carinata HOM05D002250 ORTHO05D002393 9.2e-11 70.5 100 43.0
C03p53730 Brassica napus HOM05D002250 ORTHO05D002393 9.2e-11 70.5 100 43.0
BolC3t17633H Brassica oleracea HOM05D002250 ORTHO05D002393 9.2e-11 70.5 95 44.2
unitig_748.g7499 Utricularia gibba HOM05D002250 ORTHO05D002393 9.2e-11 70.5 95 44.2
Cc06_g09300 Coffea canephora HOM05D002250 ORTHO05D002393 1.2e-10 70.1 90 48.9
HanXRQChr09g0240451 Helianthus annuus HOM05D002250 ORTHO05D002393 1.6e-10 69.7 93 48.4
DCAR_028731 Daucus carota HOM05D002250 ORTHO05D007521 2.0e-10 69.3 88 52.3
Oeu027166.1 Olea europaea HOM05D002250 ORTHO05D002393 2.7e-10 68.9 99 47.5
BcaB03g14588 Brassica carinata HOM05D002250 ORTHO05D002393 3.5e-10 68.6 94 43.6
unitig_46.g18218 Utricularia gibba HOM05D002250 ORTHO05D002393 3.5e-10 68.6 97 45.4
Thhalv10002594m.g Eutrema salsugineum HOM05D002250 ORTHO05D002393 6.0e-10 67.8 95 42.1
A01p30900 Brassica napus HOM05D002250 ORTHO05D002393 7.8e-10 67.4 100 47.0
Mapoly0036s0047 Marchantia polymorpha HOM05D002250 ORTHO05D002393 7.8e-10 67.4 91 42.9
BcaB04g20390 Brassica carinata HOM05D002250 ORTHO05D002393 1.3e-09 66.6 100 41.0
BolC7t41669H Brassica oleracea HOM05D002250 ORTHO05D002393 1.7e-09 66.2 97 49.5
BraA07t28583Z Brassica rapa HOM05D002250 ORTHO05D002393 1.7e-09 66.2 95 49.5
Prupe.7G226900 Prunus persica HOM05D002250 ORTHO05D002393 2.3e-09 65.9 95 44.2
ATR0618G234 Amborella trichopoda HOM05D002250 ORTHO05D002393 3.0e-09 65.5 98 41.8
BcaC06g35690 Brassica carinata HOM05D002250 ORTHO05D002393 3.9e-09 65.1 100 48.0
C07p12010 Brassica napus HOM05D002250 ORTHO05D002393 3.9e-09 65.1 100 48.0
A07p07960 Brassica napus HOM05D002250 ORTHO05D002393 6.6e-09 64.3 100 47.0
C01p39300 Brassica napus HOM05D002250 ORTHO05D002393 6.6e-09 64.3 100 46.0
BcaB06g26621 Brassica carinata HOM05D002250 ORTHO05D002393 1.1e-08 63.5 100 41.0
Zm00001eb122290 Zea mays HOM05D002250 ORTHO05D002393 2.5e-08 62.4 92 42.4
BolC1t03880H Brassica oleracea HOM05D002250 ORTHO05D002393 3.3e-08 62.0 95 46.3
BraA01t03219Z Brassica rapa HOM05D002250 ORTHO05D002393 3.3e-08 62.0 100 47.0
SEGI_04853 Sequoiadendron giganteum HOM05D002250 ORTHO05D002393 5.6e-08 61.2 97 42.3
ECA234G2455 Erigeron canadensis HOM05D000417 ORTHO05D007521 1.2e-07 60.1 92 39.1
ECA240G1239 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.6e-07 59.7 37 75.7
Pp3c3_23960 Physcomitrium patens HOM05D002250 ORTHO05D002393 2.1e-07 59.3 85 42.4
Zm00001eb337020 Zea mays HOM05D002250 ORTHO05D002393 1.1e-06 57.0 92 47.8
AL6G15650 Arabidopsis lyrata HOM05D002250 ORTHO05D002393 1.4e-06 56.6 102 39.2
Lalb_Chr17g0346691 Lupinus albus HOM05D002250 ORTHO05D002393 1.8e-06 56.2 93 35.5
Carub.0006s0466 Capsella rubella HOM05D002250 ORTHO05D002393 3.1e-06 55.5 100 40.0
SMO203G0172 Selaginella moellendorffii HOM05D002250 ORTHO05D002393 4.0e-06 55.1 91 39.6
SMO357G0001 Selaginella moellendorffii HOM05D002250 ORTHO05D002393 4.0e-06 55.1 91 39.6
CARHR207510 Cardamine hirsuta HOM05D002250 ORTHO05D002393 5.2e-06 54.7 105 38.1
SEGI_22935 Sequoiadendron giganteum HOM05D002250 ORTHO05D002393 5.2e-06 54.7 104 34.6
AL3G39820 Arabidopsis lyrata HOM05D002250 ORTHO05D002393 6.8e-06 54.3 95 37.9
TAR633G1402 Trochodendron aralioides HOM05D002250 ORTHO05D002393 6.8e-06 54.3 98 37.8


User provided reference genes

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