Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 6.1e-309 1063.5 626 100.0
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 3.9e-231 805.1 631 75.6
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.4e-217 757.3 522 81.0
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.4e-217 757.3 522 81.0
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.4e-212 743.4 629 72.7
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.0e-207 727.2 660 65.8
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 4.8e-205 718.4 660 65.2
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.8e-202 708.8 662 65.0
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.6e-200 703.4 659 63.3
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 1.0e-199 700.7 660 63.2
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 2.0e-198 696.4 652 65.2
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 4.4e-198 695.3 657 63.6
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.8e-197 692.6 661 63.8
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 4.8e-197 691.8 661 63.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.8e-196 689.9 660 65.2
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 2.9e-194 682.6 660 63.5
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 4.2e-193 678.7 662 63.6
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-192 676.8 658 63.1
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 8.8e-191 671.0 665 60.6
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.2e-190 670.6 663 62.3
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 4.4e-190 668.7 659 62.8
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.4e-188 663.7 663 62.7
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 2.7e-187 659.4 663 62.6
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 3.5e-187 659.1 661 62.2
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 5.9e-187 658.3 667 60.4
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.3e-186 657.1 663 62.3
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.7e-186 656.8 658 62.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.9e-185 653.3 671 61.4
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 5.5e-185 651.7 664 62.5
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 5.5e-185 651.7 652 61.3
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 7.2e-185 651.4 646 64.2
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.0e-183 645.6 654 61.0
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 8.8e-183 644.4 667 60.1
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 7.5e-182 641.3 664 60.2
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.1e-180 637.5 662 58.8
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.4e-180 637.1 660 60.5
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.4e-180 637.1 657 58.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 7.0e-180 634.8 667 58.9
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 7.0e-180 634.8 658 58.5
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 2.7e-179 632.9 663 60.9
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 7.7e-179 631.3 662 61.0
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 7.7e-179 631.3 662 61.0
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 2.9e-178 629.4 647 60.3
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 3.8e-178 629.0 668 58.2
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.2e-176 624.0 673 57.5
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.6e-176 623.6 672 57.9
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.3e-175 619.8 673 57.7
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.0e-175 619.0 656 58.1
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 6.8e-175 618.2 657 58.4
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 2.4e-172 609.8 662 57.3
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 3.2e-172 609.4 665 59.5
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 5.9e-171 605.1 652 58.3
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 2.3e-170 603.2 653 57.1
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 3.9e-170 602.4 645 59.7
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 3.9e-170 602.4 665 57.6
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 6.6e-170 601.7 651 56.2
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 6.6e-170 601.7 636 60.1
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-169 599.7 666 57.7
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 3.3e-169 599.4 653 57.1
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.6e-168 597.0 640 56.9
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.8e-168 596.3 666 57.5
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 8.0e-168 594.7 657 56.2
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.0e-167 594.3 651 57.1
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.8e-167 593.6 637 56.8
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.8e-167 593.6 651 57.6
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 4.0e-167 592.4 651 56.7
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.0e-167 592.4 662 56.9
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.0e-167 592.4 666 57.1
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 6.8e-167 591.7 664 57.5
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.5e-166 590.5 677 58.1
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.0e-166 590.1 669 56.1
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 2.6e-166 589.7 498 66.9
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 4.4e-166 589.0 640 57.0
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.1e-164 584.3 640 57.0
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.1e-164 584.3 651 55.9
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 4.1e-164 582.4 652 55.7
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 4.1e-164 582.4 652 55.7
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 4.1e-164 582.4 655 55.9
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.2e-163 580.9 659 56.4
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 2.7e-163 579.7 657 54.6
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.0e-163 578.6 659 56.3
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.0e-162 577.8 647 54.7
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.0e-162 577.8 654 55.5
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 3.0e-162 576.2 640 56.4
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 8.6e-162 574.7 648 56.2
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 8.6e-162 574.7 671 55.0
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.9e-161 573.5 660 55.8
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 4.7e-160 568.9 654 54.3
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.4e-159 567.4 652 55.1
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.1e-159 566.2 656 54.7
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 7.5e-158 561.6 610 56.7
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.7e-157 559.3 655 52.4
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 8.3e-157 558.1 662 52.3
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 3.2e-156 556.2 662 52.4
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 4.1e-156 555.8 662 55.4
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-155 553.9 662 51.5
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 4.6e-155 552.4 654 53.2
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 6.0e-155 552.0 654 53.1
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 6.0e-155 552.0 661 52.8
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.0e-154 551.2 658 55.3
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 6.6e-154 548.5 512 61.5
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.1e-153 547.7 645 56.1
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.9e-153 547.0 648 55.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 2.5e-153 546.6 659 54.0
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.3e-153 546.2 654 52.9
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.3e-153 545.8 658 51.7
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 7.3e-153 545.0 657 54.8
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 6.2e-152 542.0 664 54.1
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.1e-151 541.2 664 51.4
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.1e-151 539.7 642 51.4
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.5e-150 537.3 678 51.8
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.6e-150 536.6 654 51.4
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.9e-149 533.1 653 49.9
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 5.4e-148 528.9 660 52.7
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 7.1e-148 528.5 649 52.7
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 6.0e-147 525.4 648 52.0
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 5.1e-146 522.3 658 50.8
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-145 521.2 661 49.2
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 3.3e-145 519.6 652 52.5
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.1e-143 514.6 670 50.6
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.1e-143 514.6 643 52.4
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 2.4e-143 513.5 675 48.0
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 2.6e-142 510.0 662 49.7
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.6e-142 508.4 612 54.6
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 8.4e-141 505.0 654 52.8
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 4.2e-140 502.7 647 50.5
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 7.1e-140 501.9 647 50.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.1e-140 501.9 661 48.0
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.2e-139 501.1 658 51.5
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.8e-136 490.0 647 48.7
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.4e-135 486.9 649 50.8
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-134 484.2 678 46.9
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.5e-134 484.2 680 47.9
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.1e-132 478.0 677 47.4
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 7.1e-132 475.3 675 46.1
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.0e-130 471.5 656 48.3
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.7e-130 468.8 663 48.1
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.7e-130 468.4 628 51.3
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.3e-128 464.5 644 51.6
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.3e-128 464.5 657 47.2
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.8e-127 460.7 560 50.5
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 2.4e-127 460.3 669 47.7
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 2.4e-127 460.3 654 46.0
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 4.5e-126 456.1 639 45.9
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 5.3e-119 432.6 489 54.2
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.4e-116 424.5 652 45.6
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 5.7e-113 412.5 643 42.8
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.8e-112 409.5 645 46.8
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 2.5e-105 387.1 598 43.8
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 8.2e-104 382.1 401 59.6
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.2e-99 368.2 411 56.9
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.6e-99 367.9 662 40.3
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.0e-89 334.3 401 56.4
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 6.7e-82 309.3 522 44.6
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.5e-81 308.1 407 53.3
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 5.9e-78 296.2 646 38.2
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.0e-77 295.4 279 59.9
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 8.5e-77 292.4 652 37.3
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.7e-69 268.1 243 60.1
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 1.2e-67 261.9 227 65.6
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 4.4e-65 253.4 512 38.5
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.3e-58 231.1 634 34.7
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 5.7e-57 226.5 382 37.7
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.4e-42 178.7 273 39.6
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-35 155.2 112 68.8
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 4.0e-26 124.0 77 79.2
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.2e-23 114.4 106 54.7
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.3e-21 109.0 93 64.5
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 6.2e-19 100.1 384 25.5
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.2e-17 95.9 61 72.1
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 3.8e-16 90.9 151 43.0
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.4e-15 87.0 74 59.5
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 6.0e-14 83.6 213 39.0
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.0e-13 82.8 402 26.1
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 2.3e-13 81.6 407 24.8
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 9.6e-12 76.3 49 73.5
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.0e-10 70.9 78 53.8
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.9e-07 62.0 72 55.6
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 2.4e-07 61.6 316 22.2


User provided reference genes

Program Settings