Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 9.1e-37 156.4 78 100.0
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 5.4e-29 130.6 77 87.0
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 3.4e-23 111.3 74 81.1
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 5.4e-21 104.0 74 78.4
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 1.6e-20 102.4 68 72.1
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 2.0e-20 102.1 68 77.9
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 5.9e-20 100.5 68 73.5
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.3e-19 99.4 68 76.5
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 2.3e-19 98.6 66 72.7
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 2.3e-19 98.6 66 72.7
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 2.3e-19 98.6 69 72.5
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 6.6e-19 97.1 68 72.1
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 8.6e-19 96.7 69 76.8
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 1.9e-18 95.5 62 77.4
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 2.1e-17 92.0 68 72.1
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.7e-14 82.4 70 64.3
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 2.9e-14 81.6 66 65.2
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 2.9e-14 81.6 69 63.8
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 3.7e-14 81.3 66 68.2
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 6.3e-14 80.5 66 66.7
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 8.3e-14 80.1 70 61.4
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 8.3e-14 80.1 69 63.8
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 1.1e-13 79.7 67 62.7
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.1e-13 79.7 66 65.2
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 1.4e-13 79.3 66 65.2
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.4e-13 78.6 66 65.2
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.4e-13 78.6 66 65.2
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 2.4e-13 78.6 66 63.6
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 2.4e-13 78.6 66 65.2
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 3.2e-13 78.2 66 66.7
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 3.2e-13 78.2 64 64.1
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 4.1e-13 77.8 70 61.4
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 7.0e-13 77.0 69 60.9
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 9.2e-13 76.6 69 58.0
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.2e-12 76.3 70 60.0
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 1.2e-12 76.3 66 60.6
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.0e-12 75.5 67 61.2
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 3.5e-12 74.7 70 57.1
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 4.6e-12 74.3 66 60.6
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 5.9e-12 73.9 70 60.0
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 7.8e-12 73.6 67 59.7
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 7.8e-12 73.6 70 57.1
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.0e-11 73.2 69 59.4
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.0e-11 73.2 66 62.1
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 1.0e-11 73.2 69 56.5
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 1.3e-11 72.8 57 64.9
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 2.3e-11 72.0 66 59.1
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 2.3e-11 72.0 69 55.1
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.3e-11 72.0 66 59.1
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 2.3e-11 72.0 63 57.1
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.9e-11 71.6 67 58.2
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 2.9e-11 71.6 66 59.1
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 5.0e-11 70.9 68 55.9
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.0e-11 70.9 70 55.7
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.0e-11 70.9 69 56.5
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.1e-10 69.7 63 63.5
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.1e-10 69.7 63 63.5
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.1e-10 69.7 55 60.0
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 1.1e-10 69.7 65 60.0
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 1.1e-10 69.7 63 63.5
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.1e-10 69.7 55 63.6
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.5e-10 69.3 66 57.6
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.5e-10 69.3 69 53.6
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.5e-10 69.3 67 55.2
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.9e-10 68.9 66 57.6
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.9e-10 68.9 69 53.6
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 2.5e-10 68.6 66 57.6
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.5e-10 68.6 68 55.9
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 2.5e-10 68.6 55 63.6
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 2.5e-10 68.6 55 63.6
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 4.3e-10 67.8 66 56.1
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 5.6e-10 67.4 69 55.1
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.5e-10 66.6 63 63.5
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.2e-09 66.2 56 60.7
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.2e-09 66.2 63 54.0
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.2e-09 66.2 56 60.7
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.2e-09 66.2 72 51.4
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.6e-09 65.9 66 56.1
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 2.1e-09 65.5 68 52.9
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.1e-09 65.5 66 56.1
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 2.1e-09 65.5 66 56.1
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 2.8e-09 65.1 70 48.6
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 3.6e-09 64.7 56 60.7
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 3.6e-09 64.7 56 60.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 3.6e-09 64.7 64 60.9
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 4.7e-09 64.3 66 54.5
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 4.7e-09 64.3 70 54.3
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 6.2e-09 63.9 59 55.9
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.0e-08 63.2 67 52.2
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.0e-08 63.2 59 50.8
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.0e-08 63.2 59 50.8
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.4e-08 62.8 69 52.2
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 2.3e-08 62.0 62 51.6
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 2.3e-08 62.0 62 51.6
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 3.1e-08 61.6 62 51.6
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 5.2e-08 60.8 59 52.5
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 5.2e-08 60.8 62 51.6
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 5.2e-08 60.8 62 51.6
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 5.2e-08 60.8 59 52.5
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 6.8e-08 60.5 59 52.5
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 8.9e-08 60.1 63 55.6
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.2e-07 59.7 58 53.4
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.5e-07 59.3 66 50.0
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.5e-07 59.3 56 53.6
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.0e-07 58.9 66 53.0
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.0e-07 58.9 71 46.5
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.6e-07 58.5 56 53.6
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 3.4e-07 58.2 43 67.4
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 5.8e-07 57.4 59 47.5
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.7e-06 55.8 50 62.0
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.2e-06 55.5 56 51.8
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 4.9e-06 54.3 74 47.3


User provided reference genes

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