Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 6.7e-125 450.7 225 100.0
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.8e-106 389.4 217 88.0
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.8e-106 389.4 217 88.0
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 3.1e-106 388.7 216 89.8
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 5.9e-105 384.4 216 88.0
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.7e-104 382.9 216 87.5
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 3.3e-103 378.6 216 86.1
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 7.2e-103 377.5 216 85.2
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 1.4e-101 373.2 216 85.2
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 5.2e-101 371.3 216 84.3
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 8.9e-101 370.5 216 84.3
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 2.9e-99 365.5 216 82.4
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.2e-98 362.1 216 81.0
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.5e-97 358.6 216 80.6
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 7.8e-97 357.5 215 80.9
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 7.8e-97 357.5 215 80.5
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 1.7e-96 356.3 220 80.0
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 3.9e-96 355.1 216 80.1
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 3.9e-96 355.1 216 79.2
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 6.6e-96 354.4 216 79.2
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.1e-95 353.6 216 79.6
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.1e-95 353.6 216 79.6
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.5e-95 353.2 216 79.6
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.9e-95 352.8 216 78.7
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.9e-95 352.8 216 78.7
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.3e-95 352.1 216 77.3
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 3.3e-95 352.1 216 77.3
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.3e-95 352.1 216 78.7
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 3.3e-95 352.1 216 79.6
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 5.6e-95 351.3 216 78.2
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 7.3e-95 350.9 216 77.8
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 9.5e-95 350.5 216 77.8
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 9.5e-95 350.5 216 79.6
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.2e-94 350.1 216 78.2
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.2e-94 350.1 216 78.2
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.6e-94 349.7 216 78.7
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 2.1e-94 349.4 216 78.2
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.1e-94 349.4 216 78.7
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 3.6e-94 348.6 216 77.3
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 4.7e-94 348.2 216 78.2
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 6.2e-94 347.8 215 78.6
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 6.2e-94 347.8 216 77.3
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 6.2e-94 347.8 215 77.7
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 8.0e-94 347.4 216 78.2
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 8.0e-94 347.4 216 77.8
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 8.0e-94 347.4 215 77.7
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.0e-93 347.1 216 77.8
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.8e-93 346.3 216 76.9
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 3.1e-93 345.5 216 76.4
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 3.1e-93 345.5 215 77.2
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 4.0e-93 345.1 217 77.9
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 5.2e-93 344.7 216 75.9
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 5.2e-93 344.7 216 76.9
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 5.2e-93 344.7 216 77.8
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 5.2e-93 344.7 216 76.4
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 8.9e-93 344.0 216 76.9
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 8.9e-93 344.0 216 77.3
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 8.9e-93 344.0 216 76.9
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.2e-92 343.6 216 77.3
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.5e-92 343.2 216 76.4
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.5e-92 343.2 216 77.3
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 2.6e-92 342.4 216 76.4
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 4.4e-92 341.7 215 77.2
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 5.8e-92 341.3 216 75.0
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 5.8e-92 341.3 216 75.0
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 5.8e-92 341.3 216 77.3
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 7.5e-92 340.9 216 75.9
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 7.5e-92 340.9 216 77.3
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 9.8e-92 340.5 216 76.9
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 9.8e-92 340.5 216 75.0
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 9.8e-92 340.5 216 75.0
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 9.8e-92 340.5 216 75.9
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.3e-91 340.1 216 75.0
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.3e-91 340.1 216 75.9
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.7e-91 339.7 216 75.9
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 2.2e-91 339.3 216 75.5
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.2e-91 339.3 216 76.9
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.2e-91 339.3 216 75.9
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.9e-91 339.0 215 76.3
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.7e-91 338.6 216 76.9
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 4.9e-91 338.2 216 73.6
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 4.9e-91 338.2 215 75.8
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.9e-90 336.3 216 76.4
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 2.4e-90 335.9 224 74.6
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 7.0e-90 334.3 216 74.5
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 9.2e-90 334.0 216 75.5
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 9.2e-90 334.0 216 75.5
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.6e-89 333.2 216 74.5
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 2.7e-89 332.4 248 67.7
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.7e-89 332.4 215 74.4
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.5e-89 332.0 224 72.8
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 4.6e-89 331.6 216 74.1
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 6.0e-89 331.3 216 74.1
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 6.0e-89 331.3 216 75.0
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 6.0e-89 331.3 216 75.0
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 7.8e-89 330.9 216 73.6
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 7.8e-89 330.9 216 74.1
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.0e-88 330.5 216 74.1
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.3e-88 330.1 243 68.7
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.3e-88 330.1 216 75.0
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.7e-88 329.7 216 73.1
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 2.3e-88 329.3 216 74.5
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 2.3e-88 329.3 216 74.5
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 2.3e-88 329.3 216 74.5
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 2.3e-88 329.3 216 74.5
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 2.3e-88 329.3 216 74.5
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 2.3e-88 329.3 216 74.5
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.3e-88 329.3 249 67.1
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.3e-88 329.3 249 67.1
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 3.0e-88 328.9 221 76.5
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 5.0e-88 328.2 216 73.1
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 5.0e-88 328.2 216 74.1
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 6.6e-88 327.8 215 74.4
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 8.6e-88 327.4 216 73.6
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.3e-87 324.3 216 73.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.6e-86 323.2 230 70.9
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.6e-86 323.2 197 79.2
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.6e-86 322.0 232 69.0
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.1e-85 320.5 216 69.9
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.3e-85 319.3 216 73.1
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 3.1e-85 318.9 278 59.4
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 4.0e-85 318.5 215 72.6
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 5.2e-85 318.2 216 69.9
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.4e-84 315.1 206 73.8
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.3e-83 313.5 215 71.6
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 2.9e-83 312.4 215 69.8
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 5.1e-80 301.6 220 65.9
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.5e-79 300.1 216 69.0
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 4.0e-77 292.0 215 64.2
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.0e-77 292.0 196 75.0
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 8.4e-75 284.3 228 63.2
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 3.2e-74 282.3 215 61.9
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 8.1e-70 267.7 182 70.9
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 5.2e-69 265.0 218 66.5
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 4.2e-66 255.4 216 59.3
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 2.1e-65 253.1 216 62.0
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.0e-56 224.2 242 51.2
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 3.9e-56 222.2 152 71.7
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 8.7e-56 221.1 218 53.7
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.1e-55 220.7 219 52.1
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 4.5e-52 208.8 217 53.0
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 9.9e-52 207.6 117 82.9
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 4.6e-49 198.7 109 88.1
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 9.0e-45 184.5 118 76.3
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 1.6e-41 173.7 98 83.7
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 7.9e-41 171.4 112 76.8
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.5e-39 167.2 100 77.0
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 6.7e-32 141.7 82 79.3
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.9e-31 140.2 82 79.3
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 9.7e-31 137.9 82 78.0
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 3.2e-26 122.9 61 93.4
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 5.5e-26 122.1 115 59.1
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 8.8e-24 114.8 221 34.4
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 8.8e-24 114.8 57 100.0
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.1e-10 71.2 89 42.7
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.2e-09 67.8 53 64.2
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.6e-09 67.4 53 62.3


User provided reference genes

Program Settings