Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G30359 Trifolium pratense HOM05D003362 ORTHO05D003783 1.8e-75 285.8 144 100.0
Medtr1g115840 Medicago truncatula HOM05D003362 ORTHO05D003783 7.1e-35 151.0 89 85.4
Medtr1g115850 Medicago truncatula HOM05D003362 ORTHO05D003783 1.1e-30 137.1 96 76.0
Glyma.10G292200 Glycine max HOM05D003362 ORTHO05D003783 2.9e-28 129.0 88 73.9
Phvul.003G216600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 4.9e-28 128.3 88 73.9
Glyma.20G241600 Glycine max HOM05D003362 ORTHO05D003783 1.9e-27 126.3 88 71.6
Psat6g237920 Pisum sativum HOM05D003362 ORTHO05D003783 2.4e-27 125.9 86 70.9
Medtr1g115820 Medicago truncatula HOM05D003362 ORTHO05D003783 3.5e-26 122.1 85 70.6
Psat6g238360 Pisum sativum HOM05D003362 ORTHO05D003783 3.9e-25 118.6 87 66.7
arahy.Tifrunner.gnm1.ann1.6JHV2K Arachis hypogaea HOM05D003362 ORTHO05D003783 5.1e-25 118.2 88 65.9
arahy.Tifrunner.gnm1.ann1.LGAM8W Arachis hypogaea HOM05D003362 ORTHO05D003783 5.1e-25 118.2 88 65.9
Phvul.007G008600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.5e-24 116.7 87 66.7
TPR.G30361 Trifolium pratense HOM05D003362 ORTHO05D003783 3.3e-24 115.5 83 66.3
VMungo0720G0350 Vigna mungo HOM05D003362 ORTHO05D003783 3.3e-24 115.5 87 67.8
VMungo0720G1901 Vigna mungo HOM05D003362 ORTHO05D003783 5.6e-24 114.8 81 71.6
arahy.Tifrunner.gnm1.ann1.425ZXH Arachis hypogaea HOM05D003362 ORTHO05D003783 1.2e-23 113.6 90 62.2
Glyma.20G241500 Glycine max HOM05D003362 ORTHO05D003783 3.6e-23 112.1 83 66.3
AUR62015655 Chenopodium quinoa HOM05D003362 ORTHO05D003783 4.7e-23 111.7 87 59.8
AUR62020547 Chenopodium quinoa HOM05D003362 ORTHO05D003783 4.7e-23 111.7 87 59.8
Lj5g0004759 Lotus japonicus HOM05D003362 ORTHO05D003783 8.1e-23 110.9 88 60.2
arahy.Tifrunner.gnm1.ann1.VJQ7J1 Arachis hypogaea HOM05D003362 ORTHO05D003783 1.1e-22 110.5 87 57.5
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 1.1e-22 110.5 103 54.4
arahy.Tifrunner.gnm1.ann1.TJ3PHW Arachis hypogaea HOM05D003362 ORTHO05D003783 1.8e-22 109.8 87 59.8
MD01G1118100 Malus domestica HOM05D003362 ORTHO05D003783 1.8e-22 109.8 87 60.9
Nn2g12834 Nelumbo nucifera HOM05D003362 ORTHO05D003783 1.8e-22 109.8 87 55.2
QL08p057674 Quercus lobata HOM05D003362 ORTHO05D003783 4.0e-22 108.6 87 58.6
Lj5g0007558 Lotus japonicus HOM05D003362 ORTHO05D003783 5.2e-22 108.2 88 58.0
Lj5g0021768 Lotus japonicus HOM05D003362 ORTHO05D003783 5.2e-22 108.2 83 59.0
CSS0034202 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 6.9e-22 107.8 88 55.7
Actinidia38220 Actinidia chinensis HOM05D003362 ORTHO05D003783 9.0e-22 107.5 81 60.5
Migut.D00159 Erythranthe guttata HOM05D003362 ORTHO05D003783 9.0e-22 107.5 82 59.8
Lj1A930T84 Lonicera japonica HOM05D003362 ORTHO05D003783 9.0e-22 107.5 87 59.8
CSS0010290 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 1.2e-21 107.1 88 54.5
PGR044G1755 Punica granatum HOM05D003362 ORTHO05D003783 1.2e-21 107.1 90 60.0
Sabra10G0164900 Salix brachista HOM05D003362 ORTHO05D003783 1.2e-21 107.1 88 55.7
MD01G1118000 Malus domestica HOM05D003362 ORTHO05D003783 1.5e-21 106.7 87 59.8
CSS0050436 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 2.0e-21 106.3 86 55.8
Hund19984 Selenicereus undatus HOM05D003362 ORTHO05D003783 2.0e-21 106.3 87 58.6
Actinidia02995 Actinidia chinensis HOM05D003362 ORTHO05D003783 3.4e-21 105.5 87 55.2
Cpa.g.sc1855.1 Carica papaya HOM05D003362 ORTHO05D003783 4.4e-21 105.1 82 59.8
MD01G1117800 Malus domestica HOM05D003362 ORTHO05D003783 4.4e-21 105.1 87 57.5
MD01G1118300 Malus domestica HOM05D003362 ORTHO05D003783 4.4e-21 105.1 87 58.6
FvH4_7g20870 Fragaria vesca HOM05D003362 ORTHO05D003783 5.8e-21 104.8 85 55.3
HanXRQChr15g0496871 Helianthus annuus HOM05D003362 ORTHO05D003783 5.8e-21 104.8 80 60.0
SGA_v2.0_scaffold2G01424 Striga asiatica HOM05D003362 ORTHO05D003783 5.8e-21 104.8 86 59.3
COL.COLO4_10881 Corchorus olitorius HOM05D003362 ORTHO05D003783 7.6e-21 104.4 87 54.0
MSTRG.21607 Avicennia marina HOM05D003362 ORTHO05D003783 9.9e-21 104.0 87 55.2
Dinv31395 Davidia involucrata HOM05D003362 ORTHO05D003783 9.9e-21 104.0 87 54.0
PSO384G0434 Papaver somniferum HOM05D003362 ORTHO05D003783 9.9e-21 104.0 87 54.0
Potri.010G213000 Populus trichocarpa HOM05D003362 ORTHO05D003783 9.9e-21 104.0 88 52.3
Gohir.A13G020400 Gossypium hirsutum HOM05D003362 ORTHO05D003783 1.3e-20 103.6 87 54.0
Gohir.D13G021000 Gossypium hirsutum HOM05D003362 ORTHO05D003783 1.3e-20 103.6 87 54.0
Gorai.013G023400 Gossypium raimondii HOM05D003362 ORTHO05D003783 1.3e-20 103.6 87 54.0
PGR044G1348 Punica granatum HOM05D003362 ORTHO05D003783 1.3e-20 103.6 81 58.0
RcHm_v2.0_Chr1g0365111 Rosa chinensis HOM05D003362 ORTHO05D003783 1.3e-20 103.6 85 56.5
FAN10G3261 Fragaria x ananassa HOM05D003362 ORTHO05D003783 1.7e-20 103.2 85 55.3
GSVIVG01032619001 Vitis vinifera HOM05D003362 ORTHO05D003783 1.7e-20 103.2 87 56.3
Cfa001554 Carpinus fangiana HOM05D003362 ORTHO05D003783 2.2e-20 102.8 87 56.3
ECA232G4190 Erigeron canadensis HOM05D003362 ORTHO05D003783 2.2e-20 102.8 80 58.8
PGR142G2050 Punica granatum HOM05D003362 ORTHO05D003783 2.2e-20 102.8 86 59.3
vmacro07205 Vaccinium macrocarpon HOM05D003362 ORTHO05D003783 2.2e-20 102.8 87 54.0
FAN03G1303 Fragaria x ananassa HOM05D003362 ORTHO05D003783 2.9e-20 102.4 85 54.1
EL10Ac2g03488 Beta vulgaris HOM05D003362 ORTHO05D003783 3.8e-20 102.1 87 54.0
FAN06G2019 Fragaria x ananassa HOM05D003362 ORTHO05D003783 4.9e-20 101.7 85 54.1
Lsat_1_v5_gn_9_66221 Lactuca sativa HOM05D003362 ORTHO05D003783 4.9e-20 101.7 87 55.2
Ciclev10032697m.g Citrus clementina HOM05D003362 ORTHO05D003783 8.4e-20 100.9 87 55.2
DCAR_027694 Daucus carota HOM05D003362 ORTHO05D003783 8.4e-20 100.9 85 55.3
PSO339G0073 Papaver somniferum HOM05D003362 ORTHO05D003783 8.4e-20 100.9 87 52.9
Prupe.2G225200 Prunus persica HOM05D003362 ORTHO05D003783 8.4e-20 100.9 87 55.2
HanXRQChr15g0496901 Helianthus annuus HOM05D003362 ORTHO05D003783 1.1e-19 100.5 87 55.2
Duzib114G0926 Durio zibethinus HOM05D003362 ORTHO05D003783 1.4e-19 100.1 87 52.9
Hma1.2p1_0629F.1_g192100 Hydrangea macrophylla HOM05D003362 ORTHO05D003783 1.4e-19 100.1 82 54.9
Thecc.10G060600 Theobroma cacao HOM05D003362 ORTHO05D003783 1.4e-19 100.1 87 55.2
TWI38G1411 Tripterygium wilfordii HOM05D003362 ORTHO05D003783 1.9e-19 99.8 87 52.9
Cc02_g08570 Coffea canephora HOM05D003362 ORTHO05D003783 2.4e-19 99.4 88 53.4
Atru.chr12.582 Acer truncatum HOM05D003362 ORTHO05D003783 3.2e-19 99.0 81 55.6
Actinidia38221 Actinidia chinensis HOM05D003362 ORTHO05D003783 3.2e-19 99.0 81 55.6
ClCG09G020280 Citrullus lanatus HOM05D003362 ORTHO05D003783 3.2e-19 99.0 90 52.2
Manes.07G107200 Manihot esculenta HOM05D003362 ORTHO05D003783 3.2e-19 99.0 83 55.4
THA.LOC104825165 Tarenaya hassleriana HOM05D003362 ORTHO05D003783 3.2e-19 99.0 82 53.7
MELO3C025484.2 Cucumis melo HOM05D003362 ORTHO05D003783 4.2e-19 98.6 87 51.7
Eucgr.J01152 Eucalyptus grandis HOM05D003362 ORTHO05D003783 4.2e-19 98.6 105 47.6
MD07G1186300 Malus domestica HOM05D003362 ORTHO05D003783 4.2e-19 98.6 87 55.2
Ah.06g183020 Amaranthus hybridus HOM05D003362 ORTHO05D003783 5.4e-19 98.2 87 50.6
Lalb_Chr02g0143921 Lupinus albus HOM05D003362 ORTHO05D003783 5.4e-19 98.2 82 53.7
CsaV3_5G026140 Cucumis sativus L. HOM05D003362 ORTHO05D003783 7.1e-19 97.8 83 53.0
HanXRQChr15g0496881 Helianthus annuus HOM05D003362 ORTHO05D003783 7.1e-19 97.8 87 52.9
unitig_0.g651 Utricularia gibba HOM05D003362 ORTHO05D003783 7.1e-19 97.8 78 56.4
Eucgr.J01153 Eucalyptus grandis HOM05D003362 ORTHO05D003783 9.3e-19 97.4 78 56.4
FAN01G2140 Fragaria x ananassa HOM05D022263 ORTHO05D003783 9.3e-19 97.4 82 53.7
Eucgr.F03816 Eucalyptus grandis HOM05D003362 ORTHO05D003783 1.6e-18 96.7 81 53.1
Peaxi162Scf00006g00088 Petunia axillaris HOM05D003362 ORTHO05D003783 1.6e-18 96.7 87 50.6
Rhsim03G0098600 Rhododendron simsii HOM05D003362 ORTHO05D003783 1.6e-18 96.7 88 55.7
Sed0018943 Sechium edule HOM05D003362 ORTHO05D003783 1.6e-18 96.7 87 52.9
VMungo0720G3152 Vigna mungo HOM05D003362 ORTHO05D003783 1.6e-18 96.7 82 53.7
ATR0759G123 Amborella trichopoda HOM05D003362 ORTHO05D003783 2.7e-18 95.9 88 51.1
CiPaw.01G280400 Carya illinoinensis HOM05D003362 ORTHO05D003783 2.7e-18 95.9 87 54.0
MBI14_g16292_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 2.7e-18 95.9 87 49.4
PSO407G0338 Papaver somniferum HOM05D003362 ORTHO05D003783 2.7e-18 95.9 80 55.0
SalBow3G3107 Salvia bowleyana HOM05D003362 ORTHO05D003783 3.5e-18 95.5 87 52.9
Rhsim01G0013100 Rhododendron simsii HOM05D003362 ORTHO05D003783 4.6e-18 95.1 84 54.8
CANSAT21G2171 Cannabis sativa HOM05D003362 ORTHO05D003783 6.0e-18 94.7 80 52.5
CAN.G184.19 Capsicum annuum HOM05D003362 ORTHO05D003783 7.8e-18 94.4 84 56.0
Cc03_g07660 Coffea canephora HOM05D003362 ORTHO05D003783 7.8e-18 94.4 101 47.5
TPR.G10424 Trifolium pratense HOM05D003362 ORTHO05D003783 1.3e-17 93.6 53 84.9
AL5G36240 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 1.7e-17 93.2 82 57.3
A07p22450 Brassica napus HOM05D003362 ORTHO05D003783 1.7e-17 93.2 85 55.3
BolC6t37453H Brassica oleracea HOM05D003362 ORTHO05D003783 1.7e-17 93.2 85 55.3
BraA07t29921Z Brassica rapa HOM05D003362 ORTHO05D003783 1.7e-17 93.2 85 55.3
CARHR165140 Cardamine hirsuta HOM05D003362 ORTHO05D003783 1.7e-17 93.2 82 54.9
CDE07G1335 Ceratophyllum demersum HOM05D003362 ORTHO05D003783 1.7e-17 93.2 87 51.7
Nitab4.5_0000027g0470 Nicotiana tabacum HOM05D003362 ORTHO05D003783 1.7e-17 93.2 79 57.0
Sopen05g006080 Solanum pennellii HOM05D003362 ORTHO05D003783 1.7e-17 93.2 84 52.4
CARHR165150 Cardamine hirsuta HOM05D003362 ORTHO05D003783 2.3e-17 92.8 82 54.9
Phvul.002G276500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 2.3e-17 92.8 82 52.4
Phvul.007G008500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 2.3e-17 92.8 82 51.2
Sp5g07300 Schrenkiella parvula HOM05D003362 ORTHO05D003783 2.3e-17 92.8 85 54.1
SalBow1G4850 Salvia bowleyana HOM05D003362 ORTHO05D003783 3.0e-17 92.4 87 50.6
SalBow3G2785 Salvia bowleyana HOM05D003362 ORTHO05D003783 3.0e-17 92.4 87 51.7
BcaC08g44726 Brassica carinata HOM05D003362 ORTHO05D003783 3.9e-17 92.0 85 55.3
C06p22640 Brassica napus HOM05D003362 ORTHO05D003783 3.9e-17 92.0 85 55.3
Solyc05g010310.3 Solanum lycopersicum HOM05D003362 ORTHO05D003783 3.9e-17 92.0 84 52.4
AT3G55120 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 5.1e-17 91.7 82 56.1
BcaC07g39836 Brassica carinata HOM05D003362 ORTHO05D003783 6.6e-17 91.3 85 52.9
C08p30380 Brassica napus HOM05D003362 ORTHO05D003783 6.6e-17 91.3 85 52.9
BolC8t50659H Brassica oleracea HOM05D003362 ORTHO05D003783 6.6e-17 91.3 85 52.9
Medtr1g115870 Medicago truncatula HOM05D003362 ORTHO05D003783 6.6e-17 91.3 82 48.8
Medtr1g115890 Medicago truncatula HOM05D003362 ORTHO05D003783 6.6e-17 91.3 82 51.2
BcaB02g07695 Brassica carinata HOM05D003362 ORTHO05D003783 8.7e-17 90.9 85 52.9
Lj5g0014981 Lotus japonicus HOM05D003362 ORTHO05D003783 8.7e-17 90.9 83 53.0
EL10Ac2g03495 Beta vulgaris HOM05D003362 ORTHO05D003783 1.1e-16 90.5 85 52.9
Thhalv10010658m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 1.1e-16 90.5 82 53.7
Glyma.20G241700 Glycine max HOM05D003362 ORTHO05D003783 1.5e-16 90.1 88 53.4
Sp2g30475 Schrenkiella parvula HOM05D003362 ORTHO05D003783 1.9e-16 89.7 76 57.9
Lalb_Chr06g0164121 Lupinus albus HOM05D003362 ORTHO05D003783 2.5e-16 89.4 82 50.0
Psat6g237840 Pisum sativum HOM05D003362 ORTHO05D003783 7.3e-16 87.8 82 48.8
Zm00001eb062510 Zea mays HOM05D003362 ORTHO05D003783 7.3e-16 87.8 82 51.2
Aqoxy2G01950 Aquilegia oxysepala HOM05D003362 ORTHO05D003783 9.6e-16 87.4 80 53.8
BcaB05g22784 Brassica carinata HOM05D003362 ORTHO05D003783 1.3e-15 87.0 82 51.2
A09p48130 Brassica napus HOM05D003362 ORTHO05D003783 1.3e-15 87.0 86 52.3
BraA09t40267Z Brassica rapa HOM05D003362 ORTHO05D003783 1.6e-15 86.7 86 52.3
Carub.0008s2828 Capsella rubella HOM05D003362 ORTHO05D003783 1.6e-15 86.7 82 50.0
Lsat_1_v5_gn_2_76781 Lactuca sativa HOM05D003362 ORTHO05D003783 1.6e-15 86.7 87 48.3
Nn2g12996 Nelumbo nucifera HOM05D003362 ORTHO05D003783 1.6e-15 86.7 57 63.2
Peaxi162Scf00038g01957 Petunia axillaris HOM05D003362 ORTHO05D003783 1.6e-15 86.7 74 56.8
Solyc05g010320.4 Solanum lycopersicum HOM05D003362 ORTHO05D003783 2.1e-15 86.3 84 51.2
Sc06g0001890 Simmondsia chinensis HOM05D003362 ORTHO05D003783 2.8e-15 85.9 84 52.4
Nn2g10542 Nelumbo nucifera HOM05D003362 ORTHO05D003783 3.6e-15 85.5 86 46.5
AL8G45310 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 4.8e-15 85.1 86 48.8
BcaC07g39837 Brassica carinata HOM05D003362 ORTHO05D003783 6.2e-15 84.7 86 52.3
BolC8t50661H Brassica oleracea HOM05D003362 ORTHO05D003783 6.2e-15 84.7 86 52.3
Ca_11318_v3 Cicer arietinum L. HOM05D003362 ORTHO05D003783 6.2e-15 84.7 81 46.9
C08p30390 Brassica napus HOM05D003362 ORTHO05D003783 1.1e-14 84.0 86 52.3
Carub.0005s2175 Capsella rubella HOM05D003362 ORTHO05D003783 1.4e-14 83.6 82 50.0
RcHm_v2.0_Chr7g0221421 Rosa chinensis HOM05D003362 ORTHO05D003783 3.1e-14 82.4 69 55.1
Os03g0819600 Oryza sativa ssp. japonica HOM05D003362 ORTHO05D003783 4.0e-14 82.0 84 47.6
HPP92_021163 Vanilla planifolia HOM05D003362 ORTHO05D003783 4.0e-14 82.0 86 47.7
Aa31LG10G10040 Aethionema arabicum HOM05D003362 ORTHO05D003783 5.3e-14 81.6 74 52.7
BcaNung04348 Brassica carinata HOM05D003362 ORTHO05D003783 1.5e-13 80.1 83 48.2
C07p61310 Brassica napus HOM05D003362 ORTHO05D003783 1.5e-13 80.1 83 48.2
BolC7t46557H Brassica oleracea HOM05D003362 ORTHO05D003783 1.5e-13 80.1 83 48.2
BraA03t15453Z Brassica rapa HOM05D003362 ORTHO05D003783 1.5e-13 80.1 83 48.2
BcaB05g22785 Brassica carinata HOM05D003362 ORTHO05D003783 1.7e-12 76.6 86 47.7
SEGI_22659 Sequoiadendron giganteum HOM05D003362 ORTHO05D003783 2.2e-12 76.3 85 43.5
Sc06g0001900 Simmondsia chinensis HOM05D003362 ORTHO05D003783 2.2e-12 76.3 61 63.9
Sopen05g006090 Solanum pennellii HOM05D003362 ORTHO05D003783 2.9e-12 75.9 58 58.6
Thhalv10004922m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 6.4e-12 74.7 82 50.0
AUR62015656 Chenopodium quinoa HOM05D003362 ORTHO05D003783 8.4e-12 74.3 62 54.8
ATR0759G079 Amborella trichopoda HOM05D003362 ORTHO05D003783 3.2e-11 72.4 85 45.9
Thecc.10G060800 Theobroma cacao HOM05D003362 ORTHO05D003783 4.2e-11 72.0 87 46.0
A09p48140 Brassica napus HOM05D003362 ORTHO05D003783 1.2e-10 70.5 82 47.6
BraA09t40269Z Brassica rapa HOM05D003362 ORTHO05D003783 1.2e-10 70.5 82 47.6
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 2.1e-10 69.7 82 45.1
ATR0759G124 Amborella trichopoda HOM05D003362 ORTHO05D003783 1.0e-09 67.4 85 42.4
A03p63820 Brassica napus HOM05D003362 ORTHO05D003783 1.8e-09 66.6 92 40.2
Nitab4.5_0005313g0010 Nicotiana tabacum HOM05D003362 ORTHO05D003783 8.7e-09 64.3 57 52.6
TPR.G10384 Trifolium pratense HOM05D003362 ORTHO05D003783 3.3e-08 62.4 52 53.8
SMO172G0159 Selaginella moellendorffii HOM05D003362 ORTHO05D003783 4.3e-08 62.0 98 33.7
PSO017G4017 Papaver somniferum HOM05D006808 ORTHO05D008610 5.3e-06 55.1 82 39.0
PSO017G4891 Papaver somniferum HOM05D006808 ORTHO05D008610 5.3e-06 55.1 82 39.0
PSO017G6829 Papaver somniferum HOM05D006808 ORTHO05D008610 5.3e-06 55.1 82 39.0


User provided reference genes

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