Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29826 Trifolium pratense HOM05D002668 ORTHO05D003295 3.8e-34 147.5 70 100.0
Medtr8g068320 Medicago truncatula HOM05D002668 ORTHO05D003295 8.2e-21 103.2 57 86.0
Glyma.14G103000 Glycine max HOM05D002668 ORTHO05D003295 6.9e-20 100.1 57 82.5
Glyma.17G222400 Glycine max HOM05D002668 ORTHO05D003295 6.9e-20 100.1 57 82.5
Phvul.011G176500 Phaseolus vulgaris HOM05D002668 ORTHO05D003295 9.1e-20 99.8 57 80.7
VMungo0647G1740 Vigna mungo HOM05D002668 ORTHO05D003295 9.1e-20 99.8 57 80.7
Lalb_Chr02g0154261 Lupinus albus HOM05D002668 ORTHO05D003295 2.0e-19 98.6 57 80.7
Lj4g0016733 Lotus japonicus HOM05D002668 ORTHO05D003295 2.6e-19 98.2 52 84.6
arahy.Tifrunner.gnm1.ann1.4W5VYJ Arachis hypogaea HOM05D002668 ORTHO05D003295 4.5e-19 97.4 57 78.9
arahy.Tifrunner.gnm1.ann1.W65EFT Arachis hypogaea HOM05D002668 ORTHO05D003295 4.5e-19 97.4 57 78.9
arahy.Tifrunner.gnm1.ann1.WY0DQM Arachis hypogaea HOM05D002668 ORTHO05D003295 4.5e-19 97.4 57 78.9
Phvul.003G288000 Phaseolus vulgaris HOM05D002668 ORTHO05D003295 1.3e-18 95.9 57 78.9
Sed0007622 Sechium edule HOM05D002668 ORTHO05D003295 1.0e-15 86.3 52 78.8
ClCG01G020270 Citrullus lanatus HOM05D002668 ORTHO05D003295 2.3e-15 85.1 57 71.9
MELO3C007899.2 Cucumis melo HOM05D002668 ORTHO05D003295 2.3e-15 85.1 57 71.9
CsaV3_6G047060 Cucumis sativus L. HOM05D002668 ORTHO05D003295 2.3e-15 85.1 57 71.9
Sed0013451 Sechium edule HOM05D002668 ORTHO05D003295 2.3e-15 85.1 57 71.9
MSTRG.2710 Avicennia marina HOM05D002668 ORTHO05D003295 3.0e-15 84.7 57 71.9
CANSAT01G2746 Cannabis sativa HOM05D002668 ORTHO05D003295 3.9e-15 84.3 57 71.9
Actinidia22982 Actinidia chinensis HOM05D002668 ORTHO05D003295 5.2e-15 84.0 57 70.2
TAR381G1416 Trochodendron aralioides HOM05D002668 ORTHO05D003295 6.7e-15 83.6 57 70.2
CSS0030764 Camellia sinensis var. sinensis HOM05D002668 ORTHO05D003295 8.8e-15 83.2 52 75.0
Nitab4.5_0003271g0020 Nicotiana tabacum HOM05D002668 ORTHO05D003295 8.8e-15 83.2 57 70.2
Nitab4.5_0006286g0030 Nicotiana tabacum HOM05D002668 ORTHO05D003295 8.8e-15 83.2 57 70.2
PGR119G1345 Punica granatum HOM05D002668 ORTHO05D003295 8.8e-15 83.2 57 73.7
Cfa006970 Carpinus fangiana HOM05D002668 ORTHO05D003295 1.1e-14 82.8 57 70.2
Haze_03768 Corylus avellana HOM05D002668 ORTHO05D003295 1.1e-14 82.8 57 70.2
CDE08G1675 Ceratophyllum demersum HOM05D002668 ORTHO05D003295 1.5e-14 82.4 57 70.2
MD02G1132900 Malus domestica HOM05D002668 ORTHO05D003295 1.5e-14 82.4 57 66.7
Prupe.7G167800 Prunus persica HOM05D002668 ORTHO05D003295 2.0e-14 82.0 57 66.7
GSVIVG01018786001 Vitis vinifera HOM05D002668 ORTHO05D003295 2.0e-14 82.0 57 68.4
CiPaw.08G131900 Carya illinoinensis HOM05D002668 ORTHO05D003295 2.6e-14 81.6 57 68.4
Ciclev10001790m.g Citrus clementina HOM05D002668 ORTHO05D003295 2.6e-14 81.6 57 70.2
PSO541G5724 Papaver somniferum HOM05D002668 ORTHO05D003295 2.6e-14 81.6 57 68.4
PSO675G2492 Papaver somniferum HOM05D002668 ORTHO05D003295 2.6e-14 81.6 57 68.4
SalBow3G2189 Salvia bowleyana HOM05D002668 ORTHO05D003295 3.3e-14 81.3 57 68.4
Ciclev10021295m.g Citrus clementina HOM05D002668 ORTHO05D003295 4.4e-14 80.9 53 73.6
ECA238G0564 Erigeron canadensis HOM05D002668 ORTHO05D003295 4.4e-14 80.9 56 69.6
Peaxi162Scf00083g00053 Petunia axillaris HOM05D002668 ORTHO05D003295 4.4e-14 80.9 57 68.4
Hund14042 Selenicereus undatus HOM05D002668 ORTHO05D003295 4.4e-14 80.9 57 68.4
Solyc02g083940.3 Solanum lycopersicum HOM05D002668 ORTHO05D003295 4.4e-14 80.9 57 68.4
Sopen02g028720 Solanum pennellii HOM05D002668 ORTHO05D003295 4.4e-14 80.9 57 68.4
Lsat_1_v5_gn_2_75881 Lactuca sativa HOM05D002668 ORTHO05D003295 5.7e-14 80.5 57 68.4
QL06p032650 Quercus lobata HOM05D002668 ORTHO05D003295 5.7e-14 80.5 56 66.1
Migut.H02167 Erythranthe guttata HOM05D002668 ORTHO05D003295 7.4e-14 80.1 57 68.4
Ah.03g148710 Amaranthus hybridus HOM05D002668 ORTHO05D003295 9.7e-14 79.7 56 67.9
AUR62003374 Chenopodium quinoa HOM05D002668 ORTHO05D003295 9.7e-14 79.7 57 66.7
AUR62029456 Chenopodium quinoa HOM05D002668 ORTHO05D003295 9.7e-14 79.7 57 66.7
FvH4_1g11900 Fragaria vesca HOM05D002668 ORTHO05D003295 9.7e-14 79.7 53 71.7
FAN23G2928 Fragaria x ananassa HOM05D002668 ORTHO05D003295 9.7e-14 79.7 53 71.7
FAN26G3102 Fragaria x ananassa HOM05D002668 ORTHO05D003295 9.7e-14 79.7 53 71.7
FAN28G2466 Fragaria x ananassa HOM05D002668 ORTHO05D003295 9.7e-14 79.7 53 71.7
RcHm_v2.0_Chr2g0099491 Rosa chinensis HOM05D002668 ORTHO05D003295 9.7e-14 79.7 53 71.7
MBI09_g45311_MAGBIO Magnolia biondii HOM05D002668 ORTHO05D003295 1.7e-13 79.0 52 71.2
EL10Ac6g15474 Beta vulgaris HOM05D002668 ORTHO05D003295 2.2e-13 78.6 56 66.1
Cc07_g10670 Coffea canephora HOM05D002668 ORTHO05D003295 2.2e-13 78.6 52 71.2
DCAR_025995 Daucus carota HOM05D002668 ORTHO05D003295 2.2e-13 78.6 57 66.7
Duzib147G0985 Durio zibethinus HOM05D002668 ORTHO05D003295 2.2e-13 78.6 50 68.0
Lj2A467T23 Lonicera japonica HOM05D002668 ORTHO05D003295 2.2e-13 78.6 57 64.9
Nn1g06294 Nelumbo nucifera HOM05D002668 ORTHO05D003295 2.2e-13 78.6 52 75.0
Rhsim08G0033800 Rhododendron simsii HOM05D002668 ORTHO05D003295 2.2e-13 78.6 57 66.7
Gohir.A02G170300 Gossypium hirsutum HOM05D002668 ORTHO05D003295 2.8e-13 78.2 50 68.0
Gohir.D03G009700 Gossypium hirsutum HOM05D002668 ORTHO05D003295 2.8e-13 78.2 50 68.0
Gorai.003G010000 Gossypium raimondii HOM05D002668 ORTHO05D003295 2.8e-13 78.2 50 68.0
MD15G1245700 Malus domestica HOM05D002668 ORTHO05D003295 2.8e-13 78.2 52 67.3
Sc16g0002140 Simmondsia chinensis HOM05D002668 ORTHO05D003295 2.8e-13 78.2 50 72.0
Potri.005G114600 Populus trichocarpa HOM05D002668 ORTHO05D003295 3.7e-13 77.8 57 68.4
Manes.02G104100 Manihot esculenta HOM05D002668 ORTHO05D003295 4.8e-13 77.4 57 68.4
Thecc.01G019400 Theobroma cacao HOM05D002668 ORTHO05D003295 4.8e-13 77.4 50 66.0
COL.COLO4_21915 Corchorus olitorius HOM05D002668 ORTHO05D003295 6.3e-13 77.0 50 68.0
Sabra05G0093800 Salix brachista HOM05D002668 ORTHO05D003295 1.1e-12 76.3 57 66.7
SGA_v2.0_scaffold76G25149 Striga asiatica HOM05D002668 ORTHO05D003295 1.1e-12 76.3 57 64.9
vmacro18416 Vaccinium macrocarpon HOM05D002668 ORTHO05D003295 1.4e-12 75.9 57 64.9
HanXRQChr14g0441371 Helianthus annuus HOM05D002668 ORTHO05D003295 2.4e-12 75.1 52 69.2
ATR0481G012 Amborella trichopoda HOM05D002668 ORTHO05D003295 5.3e-12 73.9 45 75.6
unitig_899.g14711 Utricularia gibba HOM05D002668 ORTHO05D003295 5.3e-12 73.9 48 70.8
HPP92_022113 Vanilla planifolia HOM05D002668 ORTHO05D003295 5.3e-12 73.9 50 68.0
Aqoxy6G02056 Aquilegia oxysepala HOM05D002668 ORTHO05D003295 7.0e-12 73.6 52 65.4
Cpa.g.sc6.245 Carica papaya HOM05D002668 ORTHO05D003295 2.6e-11 71.6 52 65.4
SHI08556 Sapria himalayana HOM05D002668 ORTHO05D003295 3.5e-11 71.2 53 66.0
TWI09G0421 Tripterygium wilfordii HOM05D002668 ORTHO05D003295 4.5e-11 70.9 50 62.0
Os07g0589400 Oryza sativa ssp. japonica HOM05D002668 ORTHO05D003295 5.9e-11 70.5 50 66.0
Thhalv10004561m.g Eutrema salsugineum HOM05D002668 ORTHO05D003295 7.7e-11 70.1 52 65.4
BcaB07g29671 Brassica carinata HOM05D002668 ORTHO05D003295 1.0e-10 69.7 57 57.9
BcaC03g18424 Brassica carinata HOM05D002668 ORTHO05D003295 1.0e-10 69.7 57 57.9
A02p44570 Brassica napus HOM05D002668 ORTHO05D003295 1.0e-10 69.7 57 57.9
C02p64990 Brassica napus HOM05D002668 ORTHO05D003295 1.0e-10 69.7 57 57.9
BolC2t12555H Brassica oleracea HOM05D002668 ORTHO05D003295 1.0e-10 69.7 57 57.9
BraA02t09373Z Brassica rapa HOM05D002668 ORTHO05D003295 1.0e-10 69.7 57 57.9
AL8G45280 Arabidopsis lyrata HOM05D002668 ORTHO05D003295 2.2e-10 68.6 52 63.5
Carub.0008s2825 Capsella rubella HOM05D002668 ORTHO05D003295 3.8e-10 67.8 52 63.5
AT5G66240 Arabidopsis thaliana HOM05D002668 ORTHO05D003295 6.5e-10 67.0 52 61.5
CARHR281480 Cardamine hirsuta HOM05D002668 ORTHO05D003295 6.5e-10 67.0 52 61.5
Sp2g30450 Schrenkiella parvula HOM05D002668 ORTHO05D003295 2.5e-09 65.1 52 61.5
THA.LOC104821325 Tarenaya hassleriana HOM05D002668 ORTHO05D003295 2.5e-09 65.1 51 56.9
Zm00001eb298490 Zea mays HOM05D002668 ORTHO05D003295 2.5e-09 65.1 47 57.4
Aa31LG1G14740 Aethionema arabicum HOM05D002668 ORTHO05D003295 5.5e-09 63.9 38 73.7
SEGI_06316 Sequoiadendron giganteum HOM05D002668 ORTHO05D003295 1.5e-06 55.8 53 50.9


User provided reference genes

Program Settings