Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 3.5e-112 408.3 208 100.0
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.0e-82 310.5 168 92.3
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 3.7e-77 292.0 168 86.3
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 3.0e-71 272.3 172 81.4
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 3.5e-67 258.8 190 72.1
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 1.7e-66 256.5 169 79.9
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.3e-66 256.1 190 70.5
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 6.6e-66 254.6 169 78.7
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 8.6e-66 254.2 209 67.0
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.2e-64 250.4 169 75.1
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.2e-64 250.4 169 75.1
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 4.1e-52 208.8 168 64.9
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 9.2e-52 207.6 170 62.4
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 2.0e-51 206.5 172 63.4
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.3e-50 203.8 168 63.7
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 3.9e-50 202.2 172 62.2
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 3.9e-50 202.2 169 62.7
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 5.0e-50 201.8 205 55.6
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 8.6e-50 201.1 172 60.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.9e-49 199.9 171 63.7
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 3.3e-49 199.1 172 61.6
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 4.3e-49 198.7 205 56.1
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 5.6e-49 198.4 172 59.3
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 5.6e-49 198.4 172 59.3
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 5.6e-49 198.4 206 52.4
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 9.5e-49 197.6 189 56.6
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 9.5e-49 197.6 201 52.7
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 1.6e-48 196.8 168 66.1
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.6e-48 196.8 203 53.2
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.6e-48 196.8 205 51.7
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 3.6e-48 195.7 205 52.7
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 3.6e-48 195.7 206 51.9
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 8.0e-48 194.5 189 56.1
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 8.0e-48 194.5 189 56.1
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 8.0e-48 194.5 173 60.1
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.8e-47 193.4 168 60.1
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.8e-47 193.4 205 53.7
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.8e-47 193.4 191 55.5
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.8e-47 193.4 191 55.5
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.8e-47 193.4 172 59.9
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 3.1e-47 192.6 171 60.2
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 5.2e-47 191.8 170 57.1
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 5.2e-47 191.8 171 60.2
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 5.2e-47 191.8 171 59.1
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 5.2e-47 191.8 169 61.5
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 5.2e-47 191.8 172 61.6
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.8e-47 191.4 171 60.8
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 6.8e-47 191.4 174 59.8
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 1.2e-46 190.7 147 63.3
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.2e-46 190.7 173 57.8
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.5e-46 190.3 168 59.5
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.6e-46 189.5 202 51.0
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 5.8e-46 188.3 172 55.8
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 7.5e-46 188.0 168 60.1
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 7.5e-46 188.0 168 56.0
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 7.5e-46 188.0 200 51.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 7.5e-46 188.0 171 58.5
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 9.8e-46 187.6 168 54.2
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 9.8e-46 187.6 170 58.8
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.3e-45 187.2 174 58.0
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.7e-45 186.8 169 56.8
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.2e-45 186.4 191 53.9
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 2.9e-45 186.0 206 51.5
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 4.9e-45 185.3 171 57.3
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 4.9e-45 185.3 169 56.8
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 6.4e-45 184.9 169 56.8
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.1e-44 184.1 170 56.5
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.9e-44 183.3 187 51.9
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 2.4e-44 183.0 210 49.0
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 2.4e-44 183.0 193 52.8
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 2.4e-44 183.0 171 56.1
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 7.0e-44 181.4 206 47.1
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.5e-43 179.1 200 50.0
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 6.0e-43 178.3 168 53.0
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 7.8e-43 177.9 169 54.4
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.3e-42 177.2 197 49.2
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.7e-42 176.8 200 49.5
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.3e-42 176.4 172 48.8
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 3.0e-42 176.0 168 54.2
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 3.0e-42 176.0 168 52.4
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 5.1e-42 175.3 155 61.3
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.1e-41 174.1 197 48.2
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.1e-41 174.1 204 47.5
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.9e-41 173.3 190 48.4
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.9e-41 173.3 168 54.2
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 2.1e-40 169.9 196 48.0
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 6.2e-40 168.3 138 59.4
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 6.2e-40 168.3 138 59.4
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.1e-39 167.5 234 41.5
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 1.2e-38 164.1 170 49.4
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.7e-37 160.2 158 53.8
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.4e-36 157.1 170 52.4
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.7e-35 152.9 146 57.5
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 7.8e-35 151.4 169 50.3
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.7e-34 150.2 169 45.6
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.1e-34 148.7 150 54.7
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.6e-34 148.3 123 62.6
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.3e-33 146.0 152 52.6
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 3.1e-31 139.4 127 52.0
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.3e-29 134.0 152 49.3
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.8e-29 132.5 150 44.0
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.4e-29 131.7 163 42.3
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-28 129.4 150 42.7
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 2.1e-27 126.7 146 43.2
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 1.3e-26 124.0 178 38.8
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.3e-25 119.4 113 54.9
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-21 107.5 168 36.9
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.4e-21 104.8 168 35.7
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.4e-21 104.8 168 35.7
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-20 102.8 168 35.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 4.6e-19 99.0 123 49.6
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-18 97.1 150 35.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-18 97.1 94 48.9
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-18 96.7 103 42.7
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.0e-18 96.3 104 46.2
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 8.7e-18 94.7 174 39.1
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-17 93.6 91 47.3
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 2.5e-17 93.2 121 44.6
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.6e-17 91.3 149 34.9
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 8.1e-16 88.2 104 40.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.6e-08 63.9 177 27.1


User provided reference genes

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