Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 0.0e+00 1224.5 633 100.0
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 4.4e-307 1057.4 625 87.7
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 6.2e-293 1010.4 624 85.9
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 1.9e-278 962.2 625 81.6
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 7.6e-267 923.7 624 79.6
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 6.5e-266 920.6 624 79.0
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 8.7e-263 910.2 653 74.1
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 9.0e-260 900.2 632 77.1
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 7.7e-251 870.5 628 75.0
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 6.3e-237 824.3 626 73.3
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 3.0e-231 805.4 508 81.7
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 1.5e-230 803.1 636 70.9
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 4.2e-225 785.0 628 68.8
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 4.4e-222 775.0 628 67.5
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 1.3e-221 773.5 629 67.1
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 2.8e-221 772.3 631 68.8
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.8e-220 769.6 642 67.3
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 7.0e-220 767.7 630 67.1
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 7.0e-220 767.7 627 66.0
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 7.0e-220 767.7 638 67.7
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.2e-219 766.9 627 66.2
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 7.7e-219 764.2 626 66.9
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 1.0e-218 763.8 632 66.0
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.8e-218 761.9 628 66.2
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.2e-216 756.9 627 65.7
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 2.8e-216 755.7 636 65.4
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.8e-215 753.1 638 66.3
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 4.0e-215 751.9 627 66.5
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 5.2e-215 751.5 617 66.6
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 5.2e-215 751.5 638 65.8
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.2e-213 746.1 639 65.6
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 2.2e-213 746.1 638 65.4
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 4.6e-211 738.4 639 65.1
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 3.0e-210 735.7 628 65.8
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 3.3e-209 732.3 626 63.6
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 3.6e-208 728.8 627 64.9
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 6.2e-208 728.0 628 63.7
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.8e-207 724.5 671 62.0
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 5.8e-206 721.5 613 65.6
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.7e-205 719.9 623 64.8
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 4.9e-205 718.4 525 73.3
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 3.2e-204 715.7 637 63.3
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 2.0e-203 713.0 626 63.9
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 7.8e-203 711.1 627 63.6
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 5.0e-202 708.4 628 62.9
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.6e-202 708.0 626 64.2
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.1e-201 707.2 618 63.8
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.5e-201 706.8 627 62.8
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 3.3e-201 705.7 634 62.3
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.6e-201 704.9 633 61.8
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 3.6e-200 702.2 645 63.7
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.4e-199 700.3 628 62.1
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.8e-199 699.9 628 63.1
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.3e-199 699.5 626 63.6
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 5.2e-199 698.4 628 62.6
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.2e-198 697.2 668 60.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 4.4e-198 695.3 625 62.6
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.9e-197 692.6 627 61.6
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 4.9e-197 691.8 627 62.4
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 8.3e-197 691.0 632 60.9
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.5e-195 685.6 632 60.8
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 6.0e-195 684.9 630 61.7
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 8.6e-194 681.0 632 60.8
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 6.2e-192 674.9 625 59.7
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 8.1e-192 674.5 563 65.0
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 1.4e-191 673.7 625 59.4
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.5e-190 670.2 625 59.4
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 5.8e-190 668.3 625 59.0
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 3.7e-189 665.6 624 59.0
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-188 664.1 628 60.4
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-188 664.1 631 59.4
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.4e-188 663.7 626 59.7
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-188 663.7 633 59.7
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 1.9e-188 663.3 633 59.7
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 3.2e-188 662.5 633 59.7
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 5.4e-188 661.8 627 60.4
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 1.6e-187 660.2 614 60.4
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 2.1e-187 659.8 640 59.1
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 2.7e-187 659.4 613 61.5
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 4.6e-187 658.7 648 59.3
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.1e-186 655.2 651 58.2
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 4.0e-183 645.6 632 58.5
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 8.9e-183 644.4 634 59.1
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.2e-182 644.0 643 59.3
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.2e-179 634.0 645 58.0
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.3e-178 629.8 635 59.2
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 8.7e-178 627.9 644 58.7
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.9e-177 626.7 541 63.6
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.3e-176 624.0 646 57.4
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.5e-174 617.1 581 61.1
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.7e-173 613.6 575 59.8
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 6.0e-171 605.1 579 58.9
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 7.4e-169 598.2 635 55.6
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.3e-165 587.4 635 55.1
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.4e-164 583.2 607 55.4
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 4.6e-163 578.9 559 59.2
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 5.1e-162 575.5 640 54.2
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 3.3e-161 572.8 626 53.8
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 3.3e-161 572.8 573 56.2
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 8.1e-160 568.2 640 53.8
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.3e-159 565.5 600 56.3
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 2.0e-158 563.5 629 54.1
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 5.1e-154 548.9 539 58.6
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 1.5e-150 537.3 622 52.7
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 5.5e-148 528.9 393 70.7
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 4.8e-144 515.8 336 78.0
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 3.2e-140 503.1 335 75.8
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.8e-138 497.3 322 76.4
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 3.7e-136 489.6 334 73.7
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 3.4e-134 483.0 579 49.2
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.1e-132 478.0 651 48.2
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 5.5e-132 475.7 620 47.9
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.9e-124 450.7 447 56.6
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 2.7e-118 430.3 534 50.7
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-115 421.4 516 50.2
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 4.4e-105 386.3 414 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 5.2e-98 362.8 671 39.3
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.6e-91 341.3 384 54.9
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.0e-90 338.6 274 66.4
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.4e-89 333.6 319 61.8
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 2.2e-88 330.9 405 48.1
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.3e-85 321.6 195 85.6
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 4.0e-82 310.1 683 37.3
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.7e-80 304.7 332 55.1
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 7.1e-79 299.3 360 48.3
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 1.5e-76 291.6 243 65.4
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.4e-74 285.0 704 34.4
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 1.3e-72 278.5 269 59.1
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 6.6e-69 266.2 225 59.1
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.1e-63 248.8 342 48.5
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 1.9e-63 248.1 274 57.7
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.6e-57 227.6 255 56.5
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.5e-57 226.9 251 51.4
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 9.3e-55 219.2 761 29.6
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 2.7e-54 217.6 274 51.8
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.8e-53 214.9 274 48.9
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.5e-52 211.8 277 49.5
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 2.5e-52 211.1 287 48.4
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 7.6e-49 199.5 274 47.8
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 8.4e-48 196.1 105 92.4
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.0e-45 189.1 148 70.9
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 8.7e-45 186.0 119 77.3
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 4.3e-44 183.7 266 44.7
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 1.3e-43 182.2 119 80.7
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 2.6e-41 174.5 268 41.8
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.9e-40 170.2 110 77.3
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.0e-34 149.4 207 52.7
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 5.9e-33 146.7 313 33.9
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.0e-32 146.0 75 97.3
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 6.5e-32 143.3 74 97.3
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 8.5e-32 142.9 80 91.2
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.2e-31 141.0 166 55.4
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.2e-30 139.0 404 30.2
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.3e-29 135.6 222 37.8
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 3.9e-29 134.0 125 61.6
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 3.7e-27 127.5 288 36.8
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.7e-27 127.5 210 42.4
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 8.5e-24 116.3 147 42.9
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.1e-23 115.9 151 49.7
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 9.4e-23 112.8 120 54.2
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.6e-22 112.1 145 50.3
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-22 111.7 173 41.6
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 1.4e-21 109.0 136 43.4
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 7.4e-20 103.2 252 31.0
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-18 98.2 77 64.9
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 7.7e-17 93.2 411 27.7
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.5e-16 90.1 158 44.3
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 8.5e-16 89.7 53 86.8
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 2.6e-12 78.2 115 51.3
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 2.5e-07 61.6 38 89.5
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 7.2e-07 60.1 38 86.8
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 2.7e-06 58.2 73 46.6
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 3.6e-06 57.8 100 43.0
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 3.6e-06 57.8 35 68.6


User provided reference genes

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