Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 8.2e-274 946.4 471 100.0
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 4.5e-240 834.3 473 88.8
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 1.0e-236 823.2 478 87.2
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.8e-212 742.7 476 79.8
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 2.2e-202 709.1 474 77.4
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 7.8e-200 700.7 504 72.4
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.5e-198 696.4 501 72.1
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 4.7e-197 691.4 474 75.9
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 4.0e-196 688.3 480 75.6
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 2.0e-195 686.0 506 69.8
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 3.4e-195 685.3 502 69.3
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 5.8e-195 684.5 505 69.5
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 2.2e-194 682.6 479 75.2
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.2e-192 676.8 502 69.9
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 8.7e-191 670.6 502 67.9
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 1.9e-190 669.5 493 70.4
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 5.6e-190 667.9 502 71.5
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 7.3e-190 667.5 493 70.6
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 8.1e-189 664.1 490 69.6
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 2.6e-187 659.1 479 70.4
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 3.4e-187 658.7 472 71.6
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.7e-186 656.4 483 69.2
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 2.9e-186 655.6 495 67.7
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.1e-185 653.7 488 68.9
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.4e-185 653.3 476 72.1
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 4.2e-185 651.7 482 69.5
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.1e-184 649.4 483 69.4
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 3.0e-183 645.6 498 67.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 4.3e-182 641.7 490 69.4
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 1.3e-181 640.2 466 71.7
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.1e-181 639.4 470 69.8
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.3e-178 630.2 491 68.0
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.3e-178 630.2 486 66.5
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.2e-178 629.4 476 69.1
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 2.2e-178 629.4 486 66.5
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.1e-177 627.1 478 68.6
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 4.2e-177 625.2 502 64.7
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 2.1e-176 622.9 482 66.0
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 3.5e-176 622.1 498 65.7
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 2.3e-175 619.4 486 65.0
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 3.9e-175 618.6 539 62.3
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 5.1e-175 618.2 349 86.8
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 5.1e-175 618.2 491 66.2
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 6.7e-175 617.8 491 66.6
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 7.4e-174 614.4 490 65.9
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 9.6e-174 614.0 457 69.4
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 1.3e-173 613.6 492 65.7
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.1e-173 612.8 498 64.1
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 2.1e-173 612.8 464 66.6
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 6.2e-173 611.3 461 68.3
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.1e-172 610.5 454 68.5
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 2.4e-172 609.4 502 64.1
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 3.4e-171 605.5 445 69.0
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 7.6e-171 604.4 499 63.3
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.0e-170 604.0 503 63.2
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 1.3e-170 603.6 501 63.1
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.7e-170 603.2 488 64.8
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.9e-170 602.4 481 66.1
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 2.9e-170 602.4 492 65.4
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 3.8e-170 602.1 472 66.3
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 4.9e-170 601.7 488 65.0
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.1e-169 600.5 486 64.2
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.4e-169 600.1 481 65.5
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.1e-169 597.8 433 70.0
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 2.1e-168 596.3 481 65.9
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.5e-168 595.5 481 65.1
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 1.8e-167 593.2 482 65.8
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.5e-166 590.1 487 64.3
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.9e-166 589.7 451 68.3
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 3.3e-166 589.0 434 68.0
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 7.4e-166 587.8 480 63.5
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 1.4e-164 583.6 411 71.0
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 3.1e-164 582.4 396 75.3
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 6.9e-164 581.3 437 67.3
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.3e-162 577.0 438 67.1
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 3.2e-161 572.4 502 62.2
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 6.1e-160 568.2 495 61.4
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 3.9e-159 565.5 371 76.0
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 6.7e-159 564.7 433 65.4
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 2.5e-158 562.8 499 59.7
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 2.2e-157 559.7 461 62.3
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 1.4e-156 557.0 443 64.8
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 9.1e-156 554.3 503 59.2
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 9.1e-156 554.3 499 59.5
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 3.4e-155 552.4 491 60.3
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.4e-151 540.4 466 60.9
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.1e-150 537.3 540 55.7
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 2.4e-148 529.6 440 63.2
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 3.1e-148 529.3 425 65.4
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.3e-146 523.9 367 69.8
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 9.4e-145 517.7 483 59.4
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 1.1e-140 504.2 368 70.9
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.1e-140 502.7 517 53.6
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 3.1e-140 502.7 389 65.6
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.6e-134 483.0 462 57.6
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 4.5e-131 472.2 434 57.8
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.3e-130 470.7 482 53.9
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 2.7e-128 463.0 346 64.7
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.0e-126 456.8 440 55.9
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.3e-122 444.1 405 58.8
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 8.0e-120 434.9 304 69.4
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 3.8e-114 416.0 369 58.8
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.8e-112 409.8 340 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 9.8e-110 401.4 397 54.4
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 7.8e-107 391.7 430 49.8
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 3.0e-106 389.8 453 48.8
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 5.0e-106 389.0 379 54.4
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 8.0e-104 381.7 431 50.1
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 8.9e-103 378.3 271 70.5
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 3.9e-98 362.8 398 48.0
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 3.3e-97 359.8 350 57.7
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.9e-93 346.7 254 67.7
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 8.7e-82 308.5 446 41.7
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.2e-75 288.1 331 50.5
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 2.3e-74 283.9 355 46.8
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 5.3e-71 272.7 252 59.1
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 3.8e-61 240.0 404 37.1
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.3e-58 230.7 283 47.0
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 1.6e-56 224.6 438 33.6
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.4e-44 184.9 189 57.1
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 5.5e-36 156.4 113 69.0
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.2e-30 138.7 136 58.8
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 4.5e-30 136.7 125 60.8
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 6.5e-29 132.9 222 37.4
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 1.1e-23 115.5 129 57.4
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.5e-20 105.1 272 30.9
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 3.2e-20 104.0 106 51.9
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.4e-18 98.6 140 44.3
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.4e-17 93.6 89 53.9
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.4e-15 87.8 95 46.3
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 1.5e-12 78.6 67 55.2
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 7.2e-12 76.3 75 61.3
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.6e-11 75.1 109 41.3
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 4.0e-10 70.5 54 61.1
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 4.1e-07 60.5 47 74.5
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 5.9e-06 56.6 59 50.8


User provided reference genes

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