Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 4059.2 2185 100.0
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 3636.7 2230 88.7
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 3599.7 2200 88.9
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 3547.7 2196 87.1
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 3315.8 2213 81.3
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 3240.7 2200 79.6
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 3232.6 2201 79.8
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 3200.6 2203 78.6
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 3174.0 2206 77.8
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 3097.0 2221 75.7
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 3067.3 2206 75.8
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 2910.6 2115 75.0
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2520.0 2218 64.3
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2471.4 2217 62.2
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2464.1 2228 63.1
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2424.8 2214 61.1
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2423.7 2232 61.3
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2400.9 2241 60.3
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2393.6 2225 61.4
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2390.5 2239 60.3
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2389.0 2276 59.4
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2381.3 2224 60.4
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2380.9 2232 60.0
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2379.0 2269 59.3
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2365.5 2223 59.9
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2357.0 2222 61.1
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2354.3 2286 58.7
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2354.3 2236 58.9
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2350.1 2232 60.6
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2327.7 2223 60.0
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2284.6 2252 58.4
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2271.1 2220 58.1
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2256.9 2278 57.6
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2230.3 2236 58.6
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2221.8 2234 57.0
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2187.9 2241 56.4
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2176.4 2234 56.5
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2154.8 2327 55.2
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2075.4 2046 57.6
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2055.0 2231 54.6
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2050.8 2043 56.8
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2004.9 2250 53.4
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1999.9 2235 53.2
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1994.5 2317 52.2
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1988.8 2213 53.5
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1987.2 2220 52.3
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1985.7 2252 53.6
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 1982.2 2246 52.6
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1973.0 2281 52.6
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1964.1 2268 52.1
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1962.6 2174 53.8
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1955.6 2212 51.4
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1950.3 2281 51.7
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1945.2 2238 53.1
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1937.2 2223 51.5
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1932.1 2217 51.6
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1931.4 2216 51.0
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1926.8 1722 62.0
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1900.9 2223 50.3
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1888.6 2217 50.4
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1880.1 2217 49.8
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1879.8 2213 50.4
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1873.6 2236 51.5
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1869.4 2237 50.0
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1863.6 2224 50.9
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1862.4 1917 55.9
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1860.1 2236 51.2
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1859.3 2219 50.4
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1856.3 2293 50.5
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1854.3 2228 49.7
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1852.4 2234 49.8
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1851.3 2229 50.3
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1840.1 2189 51.8
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1838.9 2250 49.8
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1838.5 2221 50.7
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1833.5 2085 53.1
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1805.4 2217 50.3
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1792.7 2220 50.5
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1790.0 2261 49.8
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1776.5 2179 50.4
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1765.7 2211 49.9
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1726.5 2135 51.1
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1723.0 2182 49.6
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1695.6 1391 63.2
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1687.2 2142 50.3
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1662.1 1429 63.1
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1605.1 2360 45.1
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1575.5 1396 60.1
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1572.0 1396 60.0
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1448.0 2189 43.5
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1439.9 1460 57.9
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1402.5 2278 42.4
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1330.9 1251 58.0
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1195.3 1356 53.7
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1186.8 2226 37.8
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1161.0 1604 47.3
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 4.4e-306 1055.8 1231 51.5
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 1.9e-304 1050.4 1269 50.4
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 5.0e-273 946.0 821 62.6
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 8.2e-260 902.1 1124 46.4
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 7.0e-259 899.0 1388 45.1
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 4.4e-229 800.0 1322 41.8
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 9.2e-203 712.6 849 56.4
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.1e-186 658.3 1791 30.7
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.0e-178 630.2 975 43.4
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.5e-168 599.0 486 61.5
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 9.3e-163 579.7 802 53.4
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.2e-162 579.3 802 53.2
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 5.3e-158 563.9 1057 41.4
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.3e-140 506.1 338 82.0
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 3.2e-139 501.5 940 42.3
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 4.2e-131 474.6 1643 28.0
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 5.5e-131 474.2 426 57.0
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 7.5e-128 463.8 870 37.4
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 6.3e-127 460.7 332 76.5
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 9.1e-126 456.8 342 68.4
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 2.7e-122 445.3 1387 27.8
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 5.6e-115 421.0 648 42.1
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 7.5e-112 410.6 902 35.4
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 1.1e-94 353.6 332 62.0
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-93 350.1 239 80.8
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.7e-92 346.3 650 46.2
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 1.8e-89 336.3 280 60.0
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 8.9e-89 334.0 1878 23.0
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.8e-81 309.7 215 69.3
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 2.3e-76 292.7 272 59.6
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.6e-75 288.1 391 43.7
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 1.5e-72 280.0 447 47.7
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 2.2e-71 276.2 180 83.3
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 7.9e-61 241.1 164 74.4
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 6.2e-58 231.5 136 84.6
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.9e-57 228.0 153 73.9
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 6.7e-52 211.5 465 41.7
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 3.4e-48 199.1 129 80.6
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 2.7e-45 189.5 132 78.8
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 2.3e-44 186.4 459 37.0
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.3e-42 180.6 702 34.2
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 3.1e-41 176.0 206 47.6
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 1.0e-39 171.0 124 76.6
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.2e-38 165.6 103 76.7
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.2e-32 147.5 537 28.9
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.0e-31 144.4 327 34.9
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 5.7e-27 128.6 100 73.0
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.6e-24 120.6 225 35.6
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 5.5e-22 112.1 82 74.4
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 6.7e-20 105.1 82 70.7
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 8.2e-18 98.2 68 66.2
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.8e-12 80.5 78 53.8
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.8e-12 80.5 133 33.1
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 2.6e-11 76.6 212 30.2
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.4e-09 70.1 61 60.7
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 4.5e-08 65.9 45 71.1
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 5.9e-08 65.5 109 41.3
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 1.7e-07 63.9 88 44.3
SHI25001 Sapria himalayana HOM05D004426 ORTHO05D005417 6.5e-07 62.0 55 56.4
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 9.5e-06 58.2 404 29.2


User provided reference genes

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