Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 0.0e+00 1076.2 584 100.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 5.2e-289 997.3 552 94.0
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 3.3e-283 978.0 551 93.1
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 7.1e-278 960.3 552 91.5
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 6.2e-274 947.2 552 89.7
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 3.5e-253 878.2 553 83.4
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 4.0e-249 864.8 552 82.4
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 2.1e-245 852.4 552 81.3
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.1e-241 840.1 552 80.8
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.4e-238 829.7 577 76.8
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 3.6e-237 825.1 552 79.5
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 6.7e-236 820.8 557 78.6
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 9.7e-235 817.0 540 80.0
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 8.5e-231 803.9 593 74.2
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 5.5e-230 801.2 551 74.8
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 5.5e-230 801.2 543 76.2
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.5e-224 783.1 546 76.7
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 5.3e-217 758.1 541 72.5
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 2.9e-215 752.3 550 70.2
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 8.5e-215 750.7 554 71.3
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.5e-214 750.0 546 70.0
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.9e-214 749.6 552 71.0
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.7e-213 745.7 543 70.7
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.0e-212 741.9 554 69.9
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.5e-211 740.0 550 70.0
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 6.3e-210 734.6 543 71.6
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.3e-210 734.6 553 69.1
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.1e-209 731.9 553 68.9
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 7.0e-209 731.1 554 69.7
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.0e-208 729.6 553 69.8
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 2.7e-208 729.2 553 69.6
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 2.7e-208 729.2 552 68.5
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 8.5e-207 724.2 560 68.8
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.5e-206 721.5 556 68.9
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 3.6e-205 718.8 550 67.1
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.6e-205 718.8 558 68.5
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 8.8e-204 714.1 542 69.6
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.5e-203 713.4 543 68.5
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 2.6e-203 712.6 550 66.9
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.4e-203 712.2 538 69.7
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 4.4e-203 711.8 542 67.9
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 1.4e-201 706.8 541 66.4
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.4e-201 706.8 553 67.1
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.8e-201 706.4 547 68.0
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 5.4e-201 704.9 538 68.0
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 7.0e-201 704.5 551 66.2
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 4.5e-200 701.8 538 68.8
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.3e-199 700.3 552 65.8
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.3e-199 700.3 539 66.6
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.7e-199 699.9 552 65.6
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 2.9e-199 699.1 555 65.0
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 2.9e-199 699.1 542 66.4
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.1e-198 697.2 556 65.5
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 5.5e-198 694.9 549 65.6
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.6e-197 693.3 556 66.4
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 4.7e-197 691.8 554 62.6
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 6.1e-197 691.4 502 72.3
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 8.0e-197 691.0 534 65.2
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 8.0e-197 691.0 534 65.2
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 8.0e-197 691.0 534 65.2
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.0e-196 690.6 552 64.9
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.0e-196 689.1 544 67.6
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.2e-195 687.2 537 68.2
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.5e-195 686.8 534 65.2
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.0e-195 686.4 560 65.5
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 4.4e-195 685.3 536 65.3
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 4.4e-195 685.3 536 64.6
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 5.7e-195 684.9 544 65.8
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 5.7e-195 684.9 549 64.8
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 7.5e-195 684.5 578 63.7
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.8e-195 684.1 544 65.6
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 2.8e-194 682.6 537 68.2
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 2.8e-194 682.6 547 65.1
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.8e-194 682.6 547 65.1
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.7e-194 682.2 543 66.1
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 8.3e-194 681.0 547 64.9
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 8.3e-194 681.0 543 65.9
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.4e-193 680.2 547 64.9
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.0e-191 674.1 561 64.9
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.7e-191 673.3 540 65.0
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.3e-191 672.9 551 64.2
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 2.9e-191 672.5 555 64.0
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 3.8e-191 672.2 540 64.4
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 5.0e-191 671.8 536 64.0
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 5.0e-191 671.8 554 66.2
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.3e-190 669.1 538 66.2
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 2.1e-189 666.4 554 62.1
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 4.7e-189 665.2 548 62.6
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.8e-188 663.3 556 63.8
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 4.0e-188 662.1 548 61.9
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.5e-187 660.2 537 62.9
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.6e-187 659.4 562 63.0
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 1.6e-184 650.2 619 57.7
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.0e-184 649.8 536 64.6
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 3.5e-184 649.0 537 63.5
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 3.5e-184 649.0 462 71.9
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 3.9e-183 645.6 552 63.6
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 8.6e-183 644.4 548 60.9
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 3.3e-182 642.5 571 61.3
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.1e-180 636.0 561 61.5
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 9.8e-179 630.9 537 63.7
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.7e-178 629.0 554 58.5
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.5e-174 616.3 457 71.6
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 8.3e-170 601.3 563 57.5
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.6e-168 597.0 460 68.3
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.7e-168 596.3 546 59.9
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.7e-165 585.5 568 59.3
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 2.0e-163 580.1 442 69.5
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 3.8e-162 575.9 555 56.0
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 2.1e-157 560.1 556 55.0
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 4.4e-155 552.4 549 54.3
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.2e-154 550.1 445 66.5
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.6e-152 543.9 548 54.9
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.6e-150 535.4 556 56.1
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.6e-149 533.9 423 64.5
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 5.3e-148 528.9 536 53.5
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 2.4e-145 520.0 412 66.7
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.0e-143 514.6 347 78.4
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 6.7e-143 511.9 457 59.1
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.1e-140 504.6 340 78.5
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 5.3e-140 502.3 563 50.6
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 4.5e-139 499.2 355 75.5
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.0e-131 473.8 568 48.6
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 3.4e-123 446.4 401 58.4
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 6.5e-122 442.2 559 48.1
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.3e-118 429.5 345 68.4
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 5.9e-115 419.1 577 42.1
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.7e-114 417.5 445 51.7
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.1e-113 414.8 391 57.5
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.0e-111 408.3 415 53.0
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 4.4e-94 349.7 520 42.1
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 7.7e-91 339.0 532 40.4
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.6e-82 308.9 225 71.1
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 3.7e-69 266.9 325 52.0
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 7.0e-68 262.7 155 87.1
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.6e-67 261.5 155 87.7
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.9e-63 245.7 186 70.4
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.7e-61 241.5 190 64.7
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.2e-61 241.1 226 58.0
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 1.4e-60 238.4 201 58.2
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 2.5e-57 227.6 562 31.7
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.1e-56 224.6 167 68.9
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.6e-51 206.8 212 55.2
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.1e-47 194.1 174 58.0
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 3.1e-47 194.1 191 59.2
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 3.4e-46 190.7 597 30.8
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 7.8e-43 179.5 127 71.7
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.0e-42 179.1 158 59.5
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.6e-40 171.8 119 73.9
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.7e-40 170.2 129 69.0
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 4.7e-40 170.2 158 57.0
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.3e-37 162.2 188 51.1
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.0e-34 152.5 455 29.7
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 5.1e-34 150.2 92 84.8
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 5.1e-34 150.2 92 84.8
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 5.1e-34 150.2 92 84.8
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 7.3e-33 146.4 148 58.1
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 2.8e-32 144.4 102 70.6
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 2.2e-29 134.8 97 74.2
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 3.2e-28 131.0 92 75.0
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 6.0e-27 126.7 81 75.3
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 6.7e-26 123.2 107 61.7
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.7e-26 123.2 91 69.2
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.9e-25 121.7 101 63.4
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.8e-18 98.6 91 56.0
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.6e-16 92.0 70 62.9
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.8e-16 91.3 92 53.3
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.1e-15 89.4 58 79.3
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.4e-15 88.2 89 53.9
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 3.8e-13 80.9 75 50.7
Psat2g135600 Pisum sativum HOM05D003438 ORTHO05D004235 3.2e-12 77.8 59 62.7
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.9e-10 70.9 49 63.3
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 3.9e-10 70.9 82 45.1
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 1.6e-08 65.5 48 72.9
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 2.0e-06 58.5 557 21.7
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 1.0e-05 56.2 49 57.1


User provided reference genes

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